miRNA display CGI


Results 21 - 40 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18426 3' -55.1 NC_004681.1 + 16198 0.66 0.789383
Target:  5'- cGUGGCggcuguGCGCG-CcgCGGuGGUgACGCCa -3'
miRNA:   3'- -CACCG------CGUGCuGuaGCU-CCAgUGUGG- -5'
18426 3' -55.1 NC_004681.1 + 26253 0.66 0.789383
Target:  5'- gGUGGgGCAUGACGgacuccUCGGcGG-CAuCACCa -3'
miRNA:   3'- -CACCgCGUGCUGU------AGCU-CCaGU-GUGG- -5'
18426 3' -55.1 NC_004681.1 + 27828 0.66 0.786505
Target:  5'- gGUGGCGCAuccgucuucucaucCGGCAgCGucGUCAuUACCg -3'
miRNA:   3'- -CACCGCGU--------------GCUGUaGCucCAGU-GUGG- -5'
18426 3' -55.1 NC_004681.1 + 53812 0.67 0.779739
Target:  5'- aUGGCG-ACGAgGUCGGcgacGGUCauggACACCc -3'
miRNA:   3'- cACCGCgUGCUgUAGCU----CCAG----UGUGG- -5'
18426 3' -55.1 NC_004681.1 + 39941 0.67 0.779739
Target:  5'- uUGGCGCGCG-CGggCGcGGUgCGCGCg -3'
miRNA:   3'- cACCGCGUGCuGUa-GCuCCA-GUGUGg -5'
18426 3' -55.1 NC_004681.1 + 2435 0.67 0.779739
Target:  5'- uUGGCGCGCGGCAcgcaGAaGUgGgCGCCg -3'
miRNA:   3'- cACCGCGUGCUGUag--CUcCAgU-GUGG- -5'
18426 3' -55.1 NC_004681.1 + 5105 0.67 0.760027
Target:  5'- aGUGGaggGCACGcuguuCGUUGAGcGUCACcCCg -3'
miRNA:   3'- -CACCg--CGUGCu----GUAGCUC-CAGUGuGG- -5'
18426 3' -55.1 NC_004681.1 + 7451 0.67 0.760027
Target:  5'- uUGGCGggaggcuucgcCGCGGCggCGGGGUCA-GCCc -3'
miRNA:   3'- cACCGC-----------GUGCUGuaGCUCCAGUgUGG- -5'
18426 3' -55.1 NC_004681.1 + 65273 0.67 0.749979
Target:  5'- gGUGGCGCuugGCGGCGUCGuag-UAgACCg -3'
miRNA:   3'- -CACCGCG---UGCUGUAGCuccaGUgUGG- -5'
18426 3' -55.1 NC_004681.1 + 50096 0.68 0.729552
Target:  5'- -cGGCGCGCGGgAUgGuGGUCu--CCa -3'
miRNA:   3'- caCCGCGUGCUgUAgCuCCAGuguGG- -5'
18426 3' -55.1 NC_004681.1 + 35635 0.68 0.729552
Target:  5'- -cGGCGCagACGugGgguUCGAcauGGUgCGCGCCg -3'
miRNA:   3'- caCCGCG--UGCugU---AGCU---CCA-GUGUGG- -5'
18426 3' -55.1 NC_004681.1 + 18366 0.68 0.729552
Target:  5'- gGUGGCGCcauCGACAUgGcAGGcCAgGCg -3'
miRNA:   3'- -CACCGCGu--GCUGUAgC-UCCaGUgUGg -5'
18426 3' -55.1 NC_004681.1 + 4519 0.68 0.729552
Target:  5'- cGUGGUcuacgACGACAUCGAGG-CugACg -3'
miRNA:   3'- -CACCGcg---UGCUGUAGCUCCaGugUGg -5'
18426 3' -55.1 NC_004681.1 + 33386 0.68 0.708756
Target:  5'- -cGGCGCGacCGGCGUCGA--UgACACCc -3'
miRNA:   3'- caCCGCGU--GCUGUAGCUccAgUGUGG- -5'
18426 3' -55.1 NC_004681.1 + 17675 0.68 0.708756
Target:  5'- -cGGCGCuuGGCcgCGGcGUCACugCc -3'
miRNA:   3'- caCCGCGugCUGuaGCUcCAGUGugG- -5'
18426 3' -55.1 NC_004681.1 + 11289 0.68 0.708756
Target:  5'- -aGGCGCA-GACcagcuucucugcGUUGGGGUUAgGCCg -3'
miRNA:   3'- caCCGCGUgCUG------------UAGCUCCAGUgUGG- -5'
18426 3' -55.1 NC_004681.1 + 5274 0.68 0.708756
Target:  5'- -gGGCGCG-GACA---GGGUCugACCg -3'
miRNA:   3'- caCCGCGUgCUGUagcUCCAGugUGG- -5'
18426 3' -55.1 NC_004681.1 + 69011 0.68 0.687673
Target:  5'- gGUGGCG-GCGGCcgUGAcgauGGUCAgCGCCu -3'
miRNA:   3'- -CACCGCgUGCUGuaGCU----CCAGU-GUGG- -5'
18426 3' -55.1 NC_004681.1 + 27191 0.68 0.684491
Target:  5'- -aGGCGCGCGcuaccgggcgaaguACAcCGGcGUCGCGCCc -3'
miRNA:   3'- caCCGCGUGC--------------UGUaGCUcCAGUGUGG- -5'
18426 3' -55.1 NC_004681.1 + 12260 0.68 0.677051
Target:  5'- -cGGUGCuguggcCGACuccCGAGGUCGCcCCu -3'
miRNA:   3'- caCCGCGu-----GCUGua-GCUCCAGUGuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.