miRNA display CGI


Results 41 - 60 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18426 3' -55.1 NC_004681.1 + 68883 0.68 0.675986
Target:  5'- cUGGC-CGCGGCcgacgccAUCGAGGcgCugACCa -3'
miRNA:   3'- cACCGcGUGCUG-------UAGCUCCa-GugUGG- -5'
18426 3' -55.1 NC_004681.1 + 67036 0.69 0.666388
Target:  5'- -cGGCGCGCGGCAcCaGGG-C-CGCCa -3'
miRNA:   3'- caCCGCGUGCUGUaGcUCCaGuGUGG- -5'
18426 3' -55.1 NC_004681.1 + 66646 0.69 0.666388
Target:  5'- -cGGCGcuCugGGCAUCGGGGggUAC-CCg -3'
miRNA:   3'- caCCGC--GugCUGUAGCUCCa-GUGuGG- -5'
18426 3' -55.1 NC_004681.1 + 11867 0.69 0.659975
Target:  5'- -cGGCGCGCgcagcguaccGACGUCaccgaggacgacgaaGAGGUCAuguuCACCg -3'
miRNA:   3'- caCCGCGUG----------CUGUAG---------------CUCCAGU----GUGG- -5'
18426 3' -55.1 NC_004681.1 + 12080 0.69 0.655695
Target:  5'- -aGGCcgaGUACGugGcCGAGGUC-CGCCc -3'
miRNA:   3'- caCCG---CGUGCugUaGCUCCAGuGUGG- -5'
18426 3' -55.1 NC_004681.1 + 7369 0.69 0.655695
Target:  5'- -cGGCGCAcuCGGCGcCGAGGUgGacgGCCg -3'
miRNA:   3'- caCCGCGU--GCUGUaGCUCCAgUg--UGG- -5'
18426 3' -55.1 NC_004681.1 + 66934 0.69 0.655695
Target:  5'- -cGGCugaaccacCACGAgguUGUCGAGGUCcACACCg -3'
miRNA:   3'- caCCGc-------GUGCU---GUAGCUCCAG-UGUGG- -5'
18426 3' -55.1 NC_004681.1 + 27621 0.69 0.655695
Target:  5'- gGUGGCGCugGCGGCGgcggCGGcucuGGUCGCcgauCCa -3'
miRNA:   3'- -CACCGCG--UGCUGUa---GCU----CCAGUGu---GG- -5'
18426 3' -55.1 NC_004681.1 + 72238 0.69 0.623529
Target:  5'- -aGaGCGCaACGugAUCGAaGGUCGCAa- -3'
miRNA:   3'- caC-CGCG-UGCugUAGCU-CCAGUGUgg -5'
18426 3' -55.1 NC_004681.1 + 15949 0.69 0.623529
Target:  5'- cUGGCGCcaucuCGuuCAUUGGGGUguCGCCa -3'
miRNA:   3'- cACCGCGu----GCu-GUAGCUCCAguGUGG- -5'
18426 3' -55.1 NC_004681.1 + 66318 0.7 0.612809
Target:  5'- uUGcCGCGCGACGUCGcauugcaguucGGGUCcuugcaGCGCCa -3'
miRNA:   3'- cACcGCGUGCUGUAGC-----------UCCAG------UGUGG- -5'
18426 3' -55.1 NC_004681.1 + 62234 0.7 0.612809
Target:  5'- cUGuGCGCGCG-CAUCGccaAGGUCuucguccaccGCGCCg -3'
miRNA:   3'- cAC-CGCGUGCuGUAGC---UCCAG----------UGUGG- -5'
18426 3' -55.1 NC_004681.1 + 18737 0.7 0.602105
Target:  5'- -gGGCG-ACGGCggCGAGGcCGCGCg -3'
miRNA:   3'- caCCGCgUGCUGuaGCUCCaGUGUGg -5'
18426 3' -55.1 NC_004681.1 + 22861 0.7 0.601036
Target:  5'- gGUGGgGUcgucaauGCGACAcUCGAGGuUCAC-CCg -3'
miRNA:   3'- -CACCgCG-------UGCUGU-AGCUCC-AGUGuGG- -5'
18426 3' -55.1 NC_004681.1 + 57892 0.7 0.591426
Target:  5'- -cGGCgGCGCGGCG-CGuGGUCGCGgucuCCg -3'
miRNA:   3'- caCCG-CGUGCUGUaGCuCCAGUGU----GG- -5'
18426 3' -55.1 NC_004681.1 + 42119 0.7 0.591426
Target:  5'- uUGGCGCGCacgagguuGGCGUCGAcaaGG-CugGCCg -3'
miRNA:   3'- cACCGCGUG--------CUGUAGCU---CCaGugUGG- -5'
18426 3' -55.1 NC_004681.1 + 47148 0.7 0.57441
Target:  5'- -gGGUGCGCGcucgugcacauccuCGUCGGGGUCGgGCUc -3'
miRNA:   3'- caCCGCGUGCu-------------GUAGCUCCAGUgUGG- -5'
18426 3' -55.1 NC_004681.1 + 54992 0.7 0.57441
Target:  5'- uGUGGCGCAa-GC-UCGgccugaagugccuucAGGUCGCGCCc -3'
miRNA:   3'- -CACCGCGUgcUGuAGC---------------UCCAGUGUGG- -5'
18426 3' -55.1 NC_004681.1 + 60817 0.7 0.570173
Target:  5'- -cGGCGUAgGuguCAcgCGGGGUCGCAUCc -3'
miRNA:   3'- caCCGCGUgCu--GUa-GCUCCAGUGUGG- -5'
18426 3' -55.1 NC_004681.1 + 52372 0.71 0.518001
Target:  5'- aGUGGCccgcgGCGCGAUGUCGAgGGUCGgAUg -3'
miRNA:   3'- -CACCG-----CGUGCUGUAGCU-CCAGUgUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.