miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18426 3' -55.1 NC_004681.1 + 710 0.66 0.796041
Target:  5'- -aGGCGCggaggaaguucucgACGGCGUCGAuGG-CGC-CCu -3'
miRNA:   3'- caCCGCG--------------UGCUGUAGCU-CCaGUGuGG- -5'
18426 3' -55.1 NC_004681.1 + 2435 0.67 0.779739
Target:  5'- uUGGCGCGCGGCAcgcaGAaGUgGgCGCCg -3'
miRNA:   3'- cACCGCGUGCUGUag--CUcCAgU-GUGG- -5'
18426 3' -55.1 NC_004681.1 + 3028 0.66 0.826301
Target:  5'- -cGGCGCGCGugG-CGGugccGUCGC-CCa -3'
miRNA:   3'- caCCGCGUGCugUaGCUc---CAGUGuGG- -5'
18426 3' -55.1 NC_004681.1 + 4519 0.68 0.729552
Target:  5'- cGUGGUcuacgACGACAUCGAGG-CugACg -3'
miRNA:   3'- -CACCGcg---UGCUGUAGCUCCaGugUGg -5'
18426 3' -55.1 NC_004681.1 + 5105 0.67 0.760027
Target:  5'- aGUGGaggGCACGcuguuCGUUGAGcGUCACcCCg -3'
miRNA:   3'- -CACCg--CGUGCu----GUAGCUC-CAGUGuGG- -5'
18426 3' -55.1 NC_004681.1 + 5274 0.68 0.708756
Target:  5'- -gGGCGCG-GACA---GGGUCugACCg -3'
miRNA:   3'- caCCGCGUgCUGUagcUCCAGugUGG- -5'
18426 3' -55.1 NC_004681.1 + 6929 0.66 0.817339
Target:  5'- cGUGGCGCuucaGGCuGUCGccGUCACGguCCa -3'
miRNA:   3'- -CACCGCGug--CUG-UAGCucCAGUGU--GG- -5'
18426 3' -55.1 NC_004681.1 + 7369 0.69 0.655695
Target:  5'- -cGGCGCAcuCGGCGcCGAGGUgGacgGCCg -3'
miRNA:   3'- caCCGCGU--GCUGUaGCUCCAgUg--UGG- -5'
18426 3' -55.1 NC_004681.1 + 7451 0.67 0.760027
Target:  5'- uUGGCGggaggcuucgcCGCGGCggCGGGGUCA-GCCc -3'
miRNA:   3'- cACCGC-----------GUGCUGuaGCUCCAGUgUGG- -5'
18426 3' -55.1 NC_004681.1 + 9076 0.72 0.501696
Target:  5'- gGUGGCGC-CGACAgCGAGGagGCcgaggaggcggugaaGCCg -3'
miRNA:   3'- -CACCGCGuGCUGUaGCUCCagUG---------------UGG- -5'
18426 3' -55.1 NC_004681.1 + 11289 0.68 0.708756
Target:  5'- -aGGCGCA-GACcagcuucucugcGUUGGGGUUAgGCCg -3'
miRNA:   3'- caCCGCGUgCUG------------UAGCUCCAGUgUGG- -5'
18426 3' -55.1 NC_004681.1 + 11867 0.69 0.659975
Target:  5'- -cGGCGCGCgcagcguaccGACGUCaccgaggacgacgaaGAGGUCAuguuCACCg -3'
miRNA:   3'- caCCGCGUG----------CUGUAG---------------CUCCAGU----GUGG- -5'
18426 3' -55.1 NC_004681.1 + 12080 0.69 0.655695
Target:  5'- -aGGCcgaGUACGugGcCGAGGUC-CGCCc -3'
miRNA:   3'- caCCG---CGUGCugUaGCUCCAGuGUGG- -5'
18426 3' -55.1 NC_004681.1 + 12260 0.68 0.677051
Target:  5'- -cGGUGCuguggcCGACuccCGAGGUCGCcCCu -3'
miRNA:   3'- caCCGCGu-----GCUGua-GCUCCAGUGuGG- -5'
18426 3' -55.1 NC_004681.1 + 15949 0.69 0.623529
Target:  5'- cUGGCGCcaucuCGuuCAUUGGGGUguCGCCa -3'
miRNA:   3'- cACCGCGu----GCu-GUAGCUCCAguGUGG- -5'
18426 3' -55.1 NC_004681.1 + 16198 0.66 0.789383
Target:  5'- cGUGGCggcuguGCGCG-CcgCGGuGGUgACGCCa -3'
miRNA:   3'- -CACCG------CGUGCuGuaGCU-CCAgUGUGG- -5'
18426 3' -55.1 NC_004681.1 + 17675 0.68 0.708756
Target:  5'- -cGGCGCuuGGCcgCGGcGUCACugCc -3'
miRNA:   3'- caCCGCGugCUGuaGCUcCAGUGugG- -5'
18426 3' -55.1 NC_004681.1 + 18366 0.68 0.729552
Target:  5'- gGUGGCGCcauCGACAUgGcAGGcCAgGCg -3'
miRNA:   3'- -CACCGCGu--GCUGUAgC-UCCaGUgUGg -5'
18426 3' -55.1 NC_004681.1 + 18737 0.7 0.602105
Target:  5'- -gGGCG-ACGGCggCGAGGcCGCGCg -3'
miRNA:   3'- caCCGCgUGCUGuaGCUCCaGUGUGg -5'
18426 3' -55.1 NC_004681.1 + 20544 0.73 0.438957
Target:  5'- -gGGCG-GCGACcaccuugcuGUCGAuGGUCGCGCCu -3'
miRNA:   3'- caCCGCgUGCUG---------UAGCU-CCAGUGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.