miRNA display CGI


Results 21 - 40 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18426 3' -55.1 NC_004681.1 + 20646 0.66 0.79887
Target:  5'- -gGGUGUccucggACuACAUCGAGGUCAcCGCg -3'
miRNA:   3'- caCCGCG------UGcUGUAGCUCCAGU-GUGg -5'
18426 3' -55.1 NC_004681.1 + 22861 0.7 0.601036
Target:  5'- gGUGGgGUcgucaauGCGACAcUCGAGGuUCAC-CCg -3'
miRNA:   3'- -CACCgCG-------UGCUGU-AGCUCC-AGUGuGG- -5'
18426 3' -55.1 NC_004681.1 + 24079 0.66 0.826301
Target:  5'- gGUGGCGC-CGugGgccagCaAGGUUccgGCGCCa -3'
miRNA:   3'- -CACCGCGuGCugUa----GcUCCAG---UGUGG- -5'
18426 3' -55.1 NC_004681.1 + 24401 0.66 0.79887
Target:  5'- -aGGUGCuggaaaacgGCGACuUCGAgcuGGUC-CACCa -3'
miRNA:   3'- caCCGCG---------UGCUGuAGCU---CCAGuGUGG- -5'
18426 3' -55.1 NC_004681.1 + 26253 0.66 0.789383
Target:  5'- gGUGGgGCAUGACGgacuccUCGGcGG-CAuCACCa -3'
miRNA:   3'- -CACCgCGUGCUGU------AGCU-CCaGU-GUGG- -5'
18426 3' -55.1 NC_004681.1 + 26476 0.66 0.834201
Target:  5'- cUGGCcugGUACGACuauggCGAcuggaagGGUCAUGCCg -3'
miRNA:   3'- cACCG---CGUGCUGua---GCU-------CCAGUGUGG- -5'
18426 3' -55.1 NC_004681.1 + 26507 0.66 0.79887
Target:  5'- aUGGgGCAgaACAUCGA-GUCGCGCa -3'
miRNA:   3'- cACCgCGUgcUGUAGCUcCAGUGUGg -5'
18426 3' -55.1 NC_004681.1 + 27191 0.68 0.684491
Target:  5'- -aGGCGCGCGcuaccgggcgaaguACAcCGGcGUCGCGCCc -3'
miRNA:   3'- caCCGCGUGC--------------UGUaGCUcCAGUGUGG- -5'
18426 3' -55.1 NC_004681.1 + 27323 1.13 0.000918
Target:  5'- cGUGGCGCACGACAUCGAGGUCACACCg -3'
miRNA:   3'- -CACCGCGUGCUGUAGCUCCAGUGUGG- -5'
18426 3' -55.1 NC_004681.1 + 27506 0.84 0.090424
Target:  5'- cUGGgGCACGccucAgAUCGAGGUCGCACCg -3'
miRNA:   3'- cACCgCGUGC----UgUAGCUCCAGUGUGG- -5'
18426 3' -55.1 NC_004681.1 + 27621 0.69 0.655695
Target:  5'- gGUGGCGCugGCGGCGgcggCGGcucuGGUCGCcgauCCa -3'
miRNA:   3'- -CACCGCG--UGCUGUa---GCU----CCAGUGu---GG- -5'
18426 3' -55.1 NC_004681.1 + 27828 0.66 0.786505
Target:  5'- gGUGGCGCAuccgucuucucaucCGGCAgCGucGUCAuUACCg -3'
miRNA:   3'- -CACCGCGU--------------GCUGUaGCucCAGU-GUGG- -5'
18426 3' -55.1 NC_004681.1 + 30261 0.66 0.79887
Target:  5'- -cGGCcgGUACGGCGUCGAGac--CACCg -3'
miRNA:   3'- caCCG--CGUGCUGUAGCUCcaguGUGG- -5'
18426 3' -55.1 NC_004681.1 + 32316 0.66 0.817339
Target:  5'- uUGGCGCuu--CGUCaAGGUC-CGCCa -3'
miRNA:   3'- cACCGCGugcuGUAGcUCCAGuGUGG- -5'
18426 3' -55.1 NC_004681.1 + 33386 0.68 0.708756
Target:  5'- -cGGCGCGacCGGCGUCGA--UgACACCc -3'
miRNA:   3'- caCCGCGU--GCUGUAGCUccAgUGUGG- -5'
18426 3' -55.1 NC_004681.1 + 33466 0.66 0.789383
Target:  5'- -gGcGCGCGCGACG-CGGccGGUCucaGCCa -3'
miRNA:   3'- caC-CGCGUGCUGUaGCU--CCAGug-UGG- -5'
18426 3' -55.1 NC_004681.1 + 34705 0.66 0.808192
Target:  5'- -gGGcCGCAUcccCAUCGAGGUggaggaggcgUACACCg -3'
miRNA:   3'- caCC-GCGUGcu-GUAGCUCCA----------GUGUGG- -5'
18426 3' -55.1 NC_004681.1 + 35635 0.68 0.729552
Target:  5'- -cGGCGCagACGugGgguUCGAcauGGUgCGCGCCg -3'
miRNA:   3'- caCCGCG--UGCugU---AGCU---CCA-GUGUGG- -5'
18426 3' -55.1 NC_004681.1 + 39866 0.72 0.467833
Target:  5'- -cGGCGgGCGAgGUCuucgGGGGUCAUGCUg -3'
miRNA:   3'- caCCGCgUGCUgUAG----CUCCAGUGUGG- -5'
18426 3' -55.1 NC_004681.1 + 39941 0.67 0.779739
Target:  5'- uUGGCGCGCG-CGggCGcGGUgCGCGCg -3'
miRNA:   3'- cACCGCGUGCuGUa-GCuCCA-GUGUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.