Results 41 - 60 of 75 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18426 | 3' | -55.1 | NC_004681.1 | + | 42119 | 0.7 | 0.591426 |
Target: 5'- uUGGCGCGCacgagguuGGCGUCGAcaaGG-CugGCCg -3' miRNA: 3'- cACCGCGUG--------CUGUAGCU---CCaGugUGG- -5' |
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18426 | 3' | -55.1 | NC_004681.1 | + | 44738 | 0.71 | 0.507785 |
Target: 5'- -cGGCGCcuuCGACGUCGAGGacucccUCGCGg- -3' miRNA: 3'- caCCGCGu--GCUGUAGCUCC------AGUGUgg -5' |
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18426 | 3' | -55.1 | NC_004681.1 | + | 45114 | 0.66 | 0.835069 |
Target: 5'- -cGGgGC-CGACgccGUCGcgcAGGUCuACACCu -3' miRNA: 3'- caCCgCGuGCUG---UAGC---UCCAG-UGUGG- -5' |
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18426 | 3' | -55.1 | NC_004681.1 | + | 46772 | 0.72 | 0.477674 |
Target: 5'- -cGcGCGCACGGCGUCacGGUCAUcCCg -3' miRNA: 3'- caC-CGCGUGCUGUAGcuCCAGUGuGG- -5' |
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18426 | 3' | -55.1 | NC_004681.1 | + | 46953 | 0.66 | 0.79887 |
Target: 5'- -aGGCGguUGAuCAUCGGGGU---GCCg -3' miRNA: 3'- caCCGCguGCU-GUAGCUCCAgugUGG- -5' |
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18426 | 3' | -55.1 | NC_004681.1 | + | 47148 | 0.7 | 0.57441 |
Target: 5'- -gGGUGCGCGcucgugcacauccuCGUCGGGGUCGgGCUc -3' miRNA: 3'- caCCGCGUGCu-------------GUAGCUCCAGUgUGG- -5' |
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18426 | 3' | -55.1 | NC_004681.1 | + | 47877 | 0.76 | 0.288188 |
Target: 5'- -gGGCGCcucgcgggugaauGCGGCAUCGAGGuucuucaUCugGCCa -3' miRNA: 3'- caCCGCG-------------UGCUGUAGCUCC-------AGugUGG- -5' |
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18426 | 3' | -55.1 | NC_004681.1 | + | 50096 | 0.68 | 0.729552 |
Target: 5'- -cGGCGCGCGGgAUgGuGGUCu--CCa -3' miRNA: 3'- caCCGCGUGCUgUAgCuCCAGuguGG- -5' |
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18426 | 3' | -55.1 | NC_004681.1 | + | 50571 | 0.73 | 0.402097 |
Target: 5'- uUGGCGCAgGACAcggUCGGGGUgggCGuCGCCc -3' miRNA: 3'- cACCGCGUgCUGU---AGCUCCA---GU-GUGG- -5' |
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18426 | 3' | -55.1 | NC_004681.1 | + | 51001 | 0.66 | 0.817339 |
Target: 5'- -cGGCGU-CGACGUCGGGGa-GCucuuCCa -3' miRNA: 3'- caCCGCGuGCUGUAGCUCCagUGu---GG- -5' |
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18426 | 3' | -55.1 | NC_004681.1 | + | 52372 | 0.71 | 0.518001 |
Target: 5'- aGUGGCccgcgGCGCGAUGUCGAgGGUCGgAUg -3' miRNA: 3'- -CACCG-----CGUGCUGUAGCU-CCAGUgUGg -5' |
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18426 | 3' | -55.1 | NC_004681.1 | + | 53812 | 0.67 | 0.779739 |
Target: 5'- aUGGCG-ACGAgGUCGGcgacGGUCauggACACCc -3' miRNA: 3'- cACCGCgUGCUgUAGCU----CCAG----UGUGG- -5' |
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18426 | 3' | -55.1 | NC_004681.1 | + | 54992 | 0.7 | 0.57441 |
Target: 5'- uGUGGCGCAa-GC-UCGgccugaagugccuucAGGUCGCGCCc -3' miRNA: 3'- -CACCGCGUgcUGuAGC---------------UCCAGUGUGG- -5' |
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18426 | 3' | -55.1 | NC_004681.1 | + | 56417 | 0.66 | 0.832459 |
Target: 5'- --aGCGCACaccuguuggaggcgGGCcgCGAGGUCAucguCACCc -3' miRNA: 3'- cacCGCGUG--------------CUGuaGCUCCAGU----GUGG- -5' |
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18426 | 3' | -55.1 | NC_004681.1 | + | 57892 | 0.7 | 0.591426 |
Target: 5'- -cGGCgGCGCGGCG-CGuGGUCGCGgucuCCg -3' miRNA: 3'- caCCG-CGUGCUGUaGCuCCAGUGU----GG- -5' |
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18426 | 3' | -55.1 | NC_004681.1 | + | 58733 | 0.72 | 0.487616 |
Target: 5'- cGUGGCGCAgGACAccUUGAGGg---GCCg -3' miRNA: 3'- -CACCGCGUgCUGU--AGCUCCagugUGG- -5' |
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18426 | 3' | -55.1 | NC_004681.1 | + | 58774 | 0.72 | 0.477674 |
Target: 5'- aUGGUGuCACGcgcacCGUCGAGGcgCGCGCCc -3' miRNA: 3'- cACCGC-GUGCu----GUAGCUCCa-GUGUGG- -5' |
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18426 | 3' | -55.1 | NC_004681.1 | + | 58866 | 0.72 | 0.497654 |
Target: 5'- -cGGUGCGCGugacacCAUCGGGGgucucCACGCUg -3' miRNA: 3'- caCCGCGUGCu-----GUAGCUCCa----GUGUGG- -5' |
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18426 | 3' | -55.1 | NC_004681.1 | + | 59622 | 0.66 | 0.826301 |
Target: 5'- -gGGCGCuCGACAUCc-GG-CACGuCCa -3' miRNA: 3'- caCCGCGuGCUGUAGcuCCaGUGU-GG- -5' |
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18426 | 3' | -55.1 | NC_004681.1 | + | 60817 | 0.7 | 0.570173 |
Target: 5'- -cGGCGUAgGuguCAcgCGGGGUCGCAUCc -3' miRNA: 3'- caCCGCGUgCu--GUa-GCUCCAGUGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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