miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18426 3' -55.1 NC_004681.1 + 75123 0.66 0.826301
Target:  5'- cGUGGUGCAgaGCAUugcgcUGAGGUuccuagacCGCGCCg -3'
miRNA:   3'- -CACCGCGUgcUGUA-----GCUCCA--------GUGUGG- -5'
18426 3' -55.1 NC_004681.1 + 72238 0.69 0.623529
Target:  5'- -aGaGCGCaACGugAUCGAaGGUCGCAa- -3'
miRNA:   3'- caC-CGCG-UGCugUAGCU-CCAGUGUgg -5'
18426 3' -55.1 NC_004681.1 + 69235 0.72 0.487616
Target:  5'- aGUGGCcaGCGCGuCAUCGgcuGGGUCuguccgACACCu -3'
miRNA:   3'- -CACCG--CGUGCuGUAGC---UCCAG------UGUGG- -5'
18426 3' -55.1 NC_004681.1 + 69094 0.66 0.826301
Target:  5'- -aGGUucGCGCGG-AUCGAGGUCguugucgcACACUg -3'
miRNA:   3'- caCCG--CGUGCUgUAGCUCCAG--------UGUGG- -5'
18426 3' -55.1 NC_004681.1 + 69011 0.68 0.687673
Target:  5'- gGUGGCG-GCGGCcgUGAcgauGGUCAgCGCCu -3'
miRNA:   3'- -CACCGCgUGCUGuaGCU----CCAGU-GUGG- -5'
18426 3' -55.1 NC_004681.1 + 68883 0.68 0.675986
Target:  5'- cUGGC-CGCGGCcgacgccAUCGAGGcgCugACCa -3'
miRNA:   3'- cACCGcGUGCUG-------UAGCUCCa-GugUGG- -5'
18426 3' -55.1 NC_004681.1 + 67036 0.69 0.666388
Target:  5'- -cGGCGCGCGGCAcCaGGG-C-CGCCa -3'
miRNA:   3'- caCCGCGUGCUGUaGcUCCaGuGUGG- -5'
18426 3' -55.1 NC_004681.1 + 66953 0.66 0.817339
Target:  5'- -cGcGCGCcgagcucgaagGCGACAUCGGGGacagUCACgucgGCCu -3'
miRNA:   3'- caC-CGCG-----------UGCUGUAGCUCC----AGUG----UGG- -5'
18426 3' -55.1 NC_004681.1 + 66934 0.69 0.655695
Target:  5'- -cGGCugaaccacCACGAgguUGUCGAGGUCcACACCg -3'
miRNA:   3'- caCCGc-------GUGCU---GUAGCUCCAG-UGUGG- -5'
18426 3' -55.1 NC_004681.1 + 66646 0.69 0.666388
Target:  5'- -cGGCGcuCugGGCAUCGGGGggUAC-CCg -3'
miRNA:   3'- caCCGC--GugCUGUAGCUCCa-GUGuGG- -5'
18426 3' -55.1 NC_004681.1 + 66318 0.7 0.612809
Target:  5'- uUGcCGCGCGACGUCGcauugcaguucGGGUCcuugcaGCGCCa -3'
miRNA:   3'- cACcGCGUGCUGUAGC-----------UCCAG------UGUGG- -5'
18426 3' -55.1 NC_004681.1 + 65273 0.67 0.749979
Target:  5'- gGUGGCGCuugGCGGCGUCGuag-UAgACCg -3'
miRNA:   3'- -CACCGCG---UGCUGUAGCuccaGUgUGG- -5'
18426 3' -55.1 NC_004681.1 + 63692 0.72 0.477674
Target:  5'- aGUGGUGCGCcGCGgacUCGucauGGUCGCACa -3'
miRNA:   3'- -CACCGCGUGcUGU---AGCu---CCAGUGUGg -5'
18426 3' -55.1 NC_004681.1 + 62914 0.79 0.193007
Target:  5'- uGUGGUGCGCGACAUCGucaGUCAgGCg -3'
miRNA:   3'- -CACCGCGUGCUGUAGCuc-CAGUgUGg -5'
18426 3' -55.1 NC_004681.1 + 62234 0.7 0.612809
Target:  5'- cUGuGCGCGCG-CAUCGccaAGGUCuucguccaccGCGCCg -3'
miRNA:   3'- cAC-CGCGUGCuGUAGC---UCCAG----------UGUGG- -5'
18426 3' -55.1 NC_004681.1 + 60817 0.7 0.570173
Target:  5'- -cGGCGUAgGuguCAcgCGGGGUCGCAUCc -3'
miRNA:   3'- caCCGCGUgCu--GUa-GCUCCAGUGUGG- -5'
18426 3' -55.1 NC_004681.1 + 59622 0.66 0.826301
Target:  5'- -gGGCGCuCGACAUCc-GG-CACGuCCa -3'
miRNA:   3'- caCCGCGuGCUGUAGcuCCaGUGU-GG- -5'
18426 3' -55.1 NC_004681.1 + 58866 0.72 0.497654
Target:  5'- -cGGUGCGCGugacacCAUCGGGGgucucCACGCUg -3'
miRNA:   3'- caCCGCGUGCu-----GUAGCUCCa----GUGUGG- -5'
18426 3' -55.1 NC_004681.1 + 58774 0.72 0.477674
Target:  5'- aUGGUGuCACGcgcacCGUCGAGGcgCGCGCCc -3'
miRNA:   3'- cACCGC-GUGCu----GUAGCUCCa-GUGUGG- -5'
18426 3' -55.1 NC_004681.1 + 58733 0.72 0.487616
Target:  5'- cGUGGCGCAgGACAccUUGAGGg---GCCg -3'
miRNA:   3'- -CACCGCGUgCUGU--AGCUCCagugUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.