miRNA display CGI


Results 41 - 60 of 75 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18426 3' -55.1 NC_004681.1 + 33386 0.68 0.708756
Target:  5'- -cGGCGCGacCGGCGUCGA--UgACACCc -3'
miRNA:   3'- caCCGCGU--GCUGUAGCUccAgUGUGG- -5'
18426 3' -55.1 NC_004681.1 + 32316 0.66 0.817339
Target:  5'- uUGGCGCuu--CGUCaAGGUC-CGCCa -3'
miRNA:   3'- cACCGCGugcuGUAGcUCCAGuGUGG- -5'
18426 3' -55.1 NC_004681.1 + 30261 0.66 0.79887
Target:  5'- -cGGCcgGUACGGCGUCGAGac--CACCg -3'
miRNA:   3'- caCCG--CGUGCUGUAGCUCcaguGUGG- -5'
18426 3' -55.1 NC_004681.1 + 27828 0.66 0.786505
Target:  5'- gGUGGCGCAuccgucuucucaucCGGCAgCGucGUCAuUACCg -3'
miRNA:   3'- -CACCGCGU--------------GCUGUaGCucCAGU-GUGG- -5'
18426 3' -55.1 NC_004681.1 + 27621 0.69 0.655695
Target:  5'- gGUGGCGCugGCGGCGgcggCGGcucuGGUCGCcgauCCa -3'
miRNA:   3'- -CACCGCG--UGCUGUa---GCU----CCAGUGu---GG- -5'
18426 3' -55.1 NC_004681.1 + 27506 0.84 0.090424
Target:  5'- cUGGgGCACGccucAgAUCGAGGUCGCACCg -3'
miRNA:   3'- cACCgCGUGC----UgUAGCUCCAGUGUGG- -5'
18426 3' -55.1 NC_004681.1 + 27323 1.13 0.000918
Target:  5'- cGUGGCGCACGACAUCGAGGUCACACCg -3'
miRNA:   3'- -CACCGCGUGCUGUAGCUCCAGUGUGG- -5'
18426 3' -55.1 NC_004681.1 + 27191 0.68 0.684491
Target:  5'- -aGGCGCGCGcuaccgggcgaaguACAcCGGcGUCGCGCCc -3'
miRNA:   3'- caCCGCGUGC--------------UGUaGCUcCAGUGUGG- -5'
18426 3' -55.1 NC_004681.1 + 26507 0.66 0.79887
Target:  5'- aUGGgGCAgaACAUCGA-GUCGCGCa -3'
miRNA:   3'- cACCgCGUgcUGUAGCUcCAGUGUGg -5'
18426 3' -55.1 NC_004681.1 + 26476 0.66 0.834201
Target:  5'- cUGGCcugGUACGACuauggCGAcuggaagGGUCAUGCCg -3'
miRNA:   3'- cACCG---CGUGCUGua---GCU-------CCAGUGUGG- -5'
18426 3' -55.1 NC_004681.1 + 26253 0.66 0.789383
Target:  5'- gGUGGgGCAUGACGgacuccUCGGcGG-CAuCACCa -3'
miRNA:   3'- -CACCgCGUGCUGU------AGCU-CCaGU-GUGG- -5'
18426 3' -55.1 NC_004681.1 + 24401 0.66 0.79887
Target:  5'- -aGGUGCuggaaaacgGCGACuUCGAgcuGGUC-CACCa -3'
miRNA:   3'- caCCGCG---------UGCUGuAGCU---CCAGuGUGG- -5'
18426 3' -55.1 NC_004681.1 + 24079 0.66 0.826301
Target:  5'- gGUGGCGC-CGugGgccagCaAGGUUccgGCGCCa -3'
miRNA:   3'- -CACCGCGuGCugUa----GcUCCAG---UGUGG- -5'
18426 3' -55.1 NC_004681.1 + 22861 0.7 0.601036
Target:  5'- gGUGGgGUcgucaauGCGACAcUCGAGGuUCAC-CCg -3'
miRNA:   3'- -CACCgCG-------UGCUGU-AGCUCC-AGUGuGG- -5'
18426 3' -55.1 NC_004681.1 + 20646 0.66 0.79887
Target:  5'- -gGGUGUccucggACuACAUCGAGGUCAcCGCg -3'
miRNA:   3'- caCCGCG------UGcUGUAGCUCCAGU-GUGg -5'
18426 3' -55.1 NC_004681.1 + 20544 0.73 0.438957
Target:  5'- -gGGCG-GCGACcaccuugcuGUCGAuGGUCGCGCCu -3'
miRNA:   3'- caCCGCgUGCUG---------UAGCU-CCAGUGUGG- -5'
18426 3' -55.1 NC_004681.1 + 18737 0.7 0.602105
Target:  5'- -gGGCG-ACGGCggCGAGGcCGCGCg -3'
miRNA:   3'- caCCGCgUGCUGuaGCUCCaGUGUGg -5'
18426 3' -55.1 NC_004681.1 + 18366 0.68 0.729552
Target:  5'- gGUGGCGCcauCGACAUgGcAGGcCAgGCg -3'
miRNA:   3'- -CACCGCGu--GCUGUAgC-UCCaGUgUGg -5'
18426 3' -55.1 NC_004681.1 + 17675 0.68 0.708756
Target:  5'- -cGGCGCuuGGCcgCGGcGUCACugCc -3'
miRNA:   3'- caCCGCGugCUGuaGCUcCAGUGugG- -5'
18426 3' -55.1 NC_004681.1 + 16198 0.66 0.789383
Target:  5'- cGUGGCggcuguGCGCG-CcgCGGuGGUgACGCCa -3'
miRNA:   3'- -CACCG------CGUGCuGuaGCU-CCAgUGUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.