miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18426 3' -55.1 NC_004681.1 + 18366 0.68 0.729552
Target:  5'- gGUGGCGCcauCGACAUgGcAGGcCAgGCg -3'
miRNA:   3'- -CACCGCGu--GCUGUAgC-UCCaGUgUGg -5'
18426 3' -55.1 NC_004681.1 + 12080 0.69 0.655695
Target:  5'- -aGGCcgaGUACGugGcCGAGGUC-CGCCc -3'
miRNA:   3'- caCCG---CGUGCugUaGCUCCAGuGUGG- -5'
18426 3' -55.1 NC_004681.1 + 27621 0.69 0.655695
Target:  5'- gGUGGCGCugGCGGCGgcggCGGcucuGGUCGCcgauCCa -3'
miRNA:   3'- -CACCGCG--UGCUGUa---GCU----CCAGUGu---GG- -5'
18426 3' -55.1 NC_004681.1 + 11867 0.69 0.659975
Target:  5'- -cGGCGCGCgcagcguaccGACGUCaccgaggacgacgaaGAGGUCAuguuCACCg -3'
miRNA:   3'- caCCGCGUG----------CUGUAG---------------CUCCAGU----GUGG- -5'
18426 3' -55.1 NC_004681.1 + 66646 0.69 0.666388
Target:  5'- -cGGCGcuCugGGCAUCGGGGggUAC-CCg -3'
miRNA:   3'- caCCGC--GugCUGUAGCUCCa-GUGuGG- -5'
18426 3' -55.1 NC_004681.1 + 68883 0.68 0.675986
Target:  5'- cUGGC-CGCGGCcgacgccAUCGAGGcgCugACCa -3'
miRNA:   3'- cACCGcGUGCUG-------UAGCUCCa-GugUGG- -5'
18426 3' -55.1 NC_004681.1 + 12260 0.68 0.677051
Target:  5'- -cGGUGCuguggcCGACuccCGAGGUCGCcCCu -3'
miRNA:   3'- caCCGCGu-----GCUGua-GCUCCAGUGuGG- -5'
18426 3' -55.1 NC_004681.1 + 27191 0.68 0.684491
Target:  5'- -aGGCGCGCGcuaccgggcgaaguACAcCGGcGUCGCGCCc -3'
miRNA:   3'- caCCGCGUGC--------------UGUaGCUcCAGUGUGG- -5'
18426 3' -55.1 NC_004681.1 + 4519 0.68 0.729552
Target:  5'- cGUGGUcuacgACGACAUCGAGG-CugACg -3'
miRNA:   3'- -CACCGcg---UGCUGUAGCUCCaGugUGg -5'
18426 3' -55.1 NC_004681.1 + 15949 0.69 0.623529
Target:  5'- cUGGCGCcaucuCGuuCAUUGGGGUguCGCCa -3'
miRNA:   3'- cACCGCGu----GCu-GUAGCUCCAguGUGG- -5'
18426 3' -55.1 NC_004681.1 + 62234 0.7 0.612809
Target:  5'- cUGuGCGCGCG-CAUCGccaAGGUCuucguccaccGCGCCg -3'
miRNA:   3'- cAC-CGCGUGCuGUAGC---UCCAG----------UGUGG- -5'
18426 3' -55.1 NC_004681.1 + 18737 0.7 0.602105
Target:  5'- -gGGCG-ACGGCggCGAGGcCGCGCg -3'
miRNA:   3'- caCCGCgUGCUGuaGCUCCaGUGUGg -5'
18426 3' -55.1 NC_004681.1 + 27506 0.84 0.090424
Target:  5'- cUGGgGCACGccucAgAUCGAGGUCGCACCg -3'
miRNA:   3'- cACCgCGUGC----UgUAGCUCCAGUGUGG- -5'
18426 3' -55.1 NC_004681.1 + 46772 0.72 0.477674
Target:  5'- -cGcGCGCACGGCGUCacGGUCAUcCCg -3'
miRNA:   3'- caC-CGCGUGCUGUAGcuCCAGUGuGG- -5'
18426 3' -55.1 NC_004681.1 + 63692 0.72 0.477674
Target:  5'- aGUGGUGCGCcGCGgacUCGucauGGUCGCACa -3'
miRNA:   3'- -CACCGCGUGcUGU---AGCu---CCAGUGUGg -5'
18426 3' -55.1 NC_004681.1 + 58774 0.72 0.477674
Target:  5'- aUGGUGuCACGcgcacCGUCGAGGcgCGCGCCc -3'
miRNA:   3'- cACCGC-GUGCu----GUAGCUCCa-GUGUGG- -5'
18426 3' -55.1 NC_004681.1 + 69235 0.72 0.487616
Target:  5'- aGUGGCcaGCGCGuCAUCGgcuGGGUCuguccgACACCu -3'
miRNA:   3'- -CACCG--CGUGCuGUAGC---UCCAG------UGUGG- -5'
18426 3' -55.1 NC_004681.1 + 44738 0.71 0.507785
Target:  5'- -cGGCGCcuuCGACGUCGAGGacucccUCGCGg- -3'
miRNA:   3'- caCCGCGu--GCUGUAGCUCC------AGUGUgg -5'
18426 3' -55.1 NC_004681.1 + 52372 0.71 0.518001
Target:  5'- aGUGGCccgcgGCGCGAUGUCGAgGGUCGgAUg -3'
miRNA:   3'- -CACCG-----CGUGCUGUAGCU-CCAGUgUGg -5'
18426 3' -55.1 NC_004681.1 + 54992 0.7 0.57441
Target:  5'- uGUGGCGCAa-GC-UCGgccugaagugccuucAGGUCGCGCCc -3'
miRNA:   3'- -CACCGCGUgcUGuAGC---------------UCCAGUGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.