Results 41 - 60 of 75 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18426 | 3' | -55.1 | NC_004681.1 | + | 69011 | 0.68 | 0.687673 |
Target: 5'- gGUGGCG-GCGGCcgUGAcgauGGUCAgCGCCu -3' miRNA: 3'- -CACCGCgUGCUGuaGCU----CCAGU-GUGG- -5' |
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18426 | 3' | -55.1 | NC_004681.1 | + | 11289 | 0.68 | 0.708756 |
Target: 5'- -aGGCGCA-GACcagcuucucugcGUUGGGGUUAgGCCg -3' miRNA: 3'- caCCGCGUgCUG------------UAGCUCCAGUgUGG- -5' |
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18426 | 3' | -55.1 | NC_004681.1 | + | 5274 | 0.68 | 0.708756 |
Target: 5'- -gGGCGCG-GACA---GGGUCugACCg -3' miRNA: 3'- caCCGCGUgCUGUagcUCCAGugUGG- -5' |
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18426 | 3' | -55.1 | NC_004681.1 | + | 33386 | 0.68 | 0.708756 |
Target: 5'- -cGGCGCGacCGGCGUCGA--UgACACCc -3' miRNA: 3'- caCCGCGU--GCUGUAGCUccAgUGUGG- -5' |
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18426 | 3' | -55.1 | NC_004681.1 | + | 17675 | 0.68 | 0.708756 |
Target: 5'- -cGGCGCuuGGCcgCGGcGUCACugCc -3' miRNA: 3'- caCCGCGugCUGuaGCUcCAGUGugG- -5' |
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18426 | 3' | -55.1 | NC_004681.1 | + | 50096 | 0.68 | 0.729552 |
Target: 5'- -cGGCGCGCGGgAUgGuGGUCu--CCa -3' miRNA: 3'- caCCGCGUGCUgUAgCuCCAGuguGG- -5' |
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18426 | 3' | -55.1 | NC_004681.1 | + | 35635 | 0.68 | 0.729552 |
Target: 5'- -cGGCGCagACGugGgguUCGAcauGGUgCGCGCCg -3' miRNA: 3'- caCCGCG--UGCugU---AGCU---CCA-GUGUGG- -5' |
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18426 | 3' | -55.1 | NC_004681.1 | + | 66318 | 0.7 | 0.612809 |
Target: 5'- uUGcCGCGCGACGUCGcauugcaguucGGGUCcuugcaGCGCCa -3' miRNA: 3'- cACcGCGUGCUGUAGC-----------UCCAG------UGUGG- -5' |
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18426 | 3' | -55.1 | NC_004681.1 | + | 22861 | 0.7 | 0.601036 |
Target: 5'- gGUGGgGUcgucaauGCGACAcUCGAGGuUCAC-CCg -3' miRNA: 3'- -CACCgCG-------UGCUGU-AGCUCC-AGUGuGG- -5' |
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18426 | 3' | -55.1 | NC_004681.1 | + | 57892 | 0.7 | 0.591426 |
Target: 5'- -cGGCgGCGCGGCG-CGuGGUCGCGgucuCCg -3' miRNA: 3'- caCCG-CGUGCUGUaGCuCCAGUGU----GG- -5' |
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18426 | 3' | -55.1 | NC_004681.1 | + | 47877 | 0.76 | 0.288188 |
Target: 5'- -gGGCGCcucgcgggugaauGCGGCAUCGAGGuucuucaUCugGCCa -3' miRNA: 3'- caCCGCG-------------UGCUGUAGCUCC-------AGugUGG- -5' |
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18426 | 3' | -55.1 | NC_004681.1 | + | 50571 | 0.73 | 0.402097 |
Target: 5'- uUGGCGCAgGACAcggUCGGGGUgggCGuCGCCc -3' miRNA: 3'- cACCGCGUgCUGU---AGCUCCA---GU-GUGG- -5' |
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18426 | 3' | -55.1 | NC_004681.1 | + | 20544 | 0.73 | 0.438957 |
Target: 5'- -gGGCG-GCGACcaccuugcuGUCGAuGGUCGCGCCu -3' miRNA: 3'- caCCGCgUGCUG---------UAGCU-CCAGUGUGG- -5' |
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18426 | 3' | -55.1 | NC_004681.1 | + | 39866 | 0.72 | 0.467833 |
Target: 5'- -cGGCGgGCGAgGUCuucgGGGGUCAUGCUg -3' miRNA: 3'- caCCGCgUGCUgUAG----CUCCAGUGUGG- -5' |
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18426 | 3' | -55.1 | NC_004681.1 | + | 58733 | 0.72 | 0.487616 |
Target: 5'- cGUGGCGCAgGACAccUUGAGGg---GCCg -3' miRNA: 3'- -CACCGCGUgCUGU--AGCUCCagugUGG- -5' |
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18426 | 3' | -55.1 | NC_004681.1 | + | 58866 | 0.72 | 0.497654 |
Target: 5'- -cGGUGCGCGugacacCAUCGGGGgucucCACGCUg -3' miRNA: 3'- caCCGCGUGCu-----GUAGCUCCa----GUGUGG- -5' |
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18426 | 3' | -55.1 | NC_004681.1 | + | 9076 | 0.72 | 0.501696 |
Target: 5'- gGUGGCGC-CGACAgCGAGGagGCcgaggaggcggugaaGCCg -3' miRNA: 3'- -CACCGCGuGCUGUaGCUCCagUG---------------UGG- -5' |
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18426 | 3' | -55.1 | NC_004681.1 | + | 60817 | 0.7 | 0.570173 |
Target: 5'- -cGGCGUAgGuguCAcgCGGGGUCGCAUCc -3' miRNA: 3'- caCCGCGUgCu--GUa-GCUCCAGUGUGG- -5' |
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18426 | 3' | -55.1 | NC_004681.1 | + | 47148 | 0.7 | 0.57441 |
Target: 5'- -gGGUGCGCGcucgugcacauccuCGUCGGGGUCGgGCUc -3' miRNA: 3'- caCCGCGUGCu-------------GUAGCUCCAGUgUGG- -5' |
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18426 | 3' | -55.1 | NC_004681.1 | + | 42119 | 0.7 | 0.591426 |
Target: 5'- uUGGCGCGCacgagguuGGCGUCGAcaaGG-CugGCCg -3' miRNA: 3'- cACCGCGUG--------CUGUAGCU---CCaGugUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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