miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18426 3' -55.1 NC_004681.1 + 62914 0.79 0.193007
Target:  5'- uGUGGUGCGCGACAUCGucaGUCAgGCg -3'
miRNA:   3'- -CACCGCGUGCUGUAGCuc-CAGUgUGg -5'
18426 3' -55.1 NC_004681.1 + 67036 0.69 0.666388
Target:  5'- -cGGCGCGCGGCAcCaGGG-C-CGCCa -3'
miRNA:   3'- caCCGCGUGCUGUaGcUCCaGuGUGG- -5'
18426 3' -55.1 NC_004681.1 + 11289 0.68 0.708756
Target:  5'- -aGGCGCA-GACcagcuucucugcGUUGGGGUUAgGCCg -3'
miRNA:   3'- caCCGCGUgCUG------------UAGCUCCAGUgUGG- -5'
18426 3' -55.1 NC_004681.1 + 3028 0.66 0.826301
Target:  5'- -cGGCGCGCGugG-CGGugccGUCGC-CCa -3'
miRNA:   3'- caCCGCGUGCugUaGCUc---CAGUGuGG- -5'
18426 3' -55.1 NC_004681.1 + 39866 0.72 0.467833
Target:  5'- -cGGCGgGCGAgGUCuucgGGGGUCAUGCUg -3'
miRNA:   3'- caCCGCgUGCUgUAG----CUCCAGUGUGG- -5'
18426 3' -55.1 NC_004681.1 + 58733 0.72 0.487616
Target:  5'- cGUGGCGCAgGACAccUUGAGGg---GCCg -3'
miRNA:   3'- -CACCGCGUgCUGU--AGCUCCagugUGG- -5'
18426 3' -55.1 NC_004681.1 + 9076 0.72 0.501696
Target:  5'- gGUGGCGC-CGACAgCGAGGagGCcgaggaggcggugaaGCCg -3'
miRNA:   3'- -CACCGCGuGCUGUaGCUCCagUG---------------UGG- -5'
18426 3' -55.1 NC_004681.1 + 60817 0.7 0.570173
Target:  5'- -cGGCGUAgGuguCAcgCGGGGUCGCAUCc -3'
miRNA:   3'- caCCGCGUgCu--GUa-GCUCCAGUGUGG- -5'
18426 3' -55.1 NC_004681.1 + 57892 0.7 0.591426
Target:  5'- -cGGCgGCGCGGCG-CGuGGUCGCGgucuCCg -3'
miRNA:   3'- caCCG-CGUGCUGUaGCuCCAGUGU----GG- -5'
18426 3' -55.1 NC_004681.1 + 7369 0.69 0.655695
Target:  5'- -cGGCGCAcuCGGCGcCGAGGUgGacgGCCg -3'
miRNA:   3'- caCCGCGU--GCUGUaGCUCCAgUg--UGG- -5'
18426 3' -55.1 NC_004681.1 + 66318 0.7 0.612809
Target:  5'- uUGcCGCGCGACGUCGcauugcaguucGGGUCcuugcaGCGCCa -3'
miRNA:   3'- cACcGCGUGCUGUAGC-----------UCCAG------UGUGG- -5'
18426 3' -55.1 NC_004681.1 + 42119 0.7 0.591426
Target:  5'- uUGGCGCGCacgagguuGGCGUCGAcaaGG-CugGCCg -3'
miRNA:   3'- cACCGCGUG--------CUGUAGCU---CCaGugUGG- -5'
18426 3' -55.1 NC_004681.1 + 47877 0.76 0.288188
Target:  5'- -gGGCGCcucgcgggugaauGCGGCAUCGAGGuucuucaUCugGCCa -3'
miRNA:   3'- caCCGCG-------------UGCUGUAGCUCC-------AGugUGG- -5'
18426 3' -55.1 NC_004681.1 + 72238 0.69 0.623529
Target:  5'- -aGaGCGCaACGugAUCGAaGGUCGCAa- -3'
miRNA:   3'- caC-CGCG-UGCugUAGCU-CCAGUGUgg -5'
18426 3' -55.1 NC_004681.1 + 50571 0.73 0.402097
Target:  5'- uUGGCGCAgGACAcggUCGGGGUgggCGuCGCCc -3'
miRNA:   3'- cACCGCGUgCUGU---AGCUCCA---GU-GUGG- -5'
18426 3' -55.1 NC_004681.1 + 47148 0.7 0.57441
Target:  5'- -gGGUGCGCGcucgugcacauccuCGUCGGGGUCGgGCUc -3'
miRNA:   3'- caCCGCGUGCu-------------GUAGCUCCAGUgUGG- -5'
18426 3' -55.1 NC_004681.1 + 66934 0.69 0.655695
Target:  5'- -cGGCugaaccacCACGAgguUGUCGAGGUCcACACCg -3'
miRNA:   3'- caCCGc-------GUGCU---GUAGCUCCAG-UGUGG- -5'
18426 3' -55.1 NC_004681.1 + 69011 0.68 0.687673
Target:  5'- gGUGGCG-GCGGCcgUGAcgauGGUCAgCGCCu -3'
miRNA:   3'- -CACCGCgUGCUGuaGCU----CCAGU-GUGG- -5'
18426 3' -55.1 NC_004681.1 + 20544 0.73 0.438957
Target:  5'- -gGGCG-GCGACcaccuugcuGUCGAuGGUCGCGCCu -3'
miRNA:   3'- caCCGCgUGCUG---------UAGCU-CCAGUGUGG- -5'
18426 3' -55.1 NC_004681.1 + 58866 0.72 0.497654
Target:  5'- -cGGUGCGCGugacacCAUCGGGGgucucCACGCUg -3'
miRNA:   3'- caCCGCGUGCu-----GUAGCUCCa----GUGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.