miRNA display CGI


Results 21 - 40 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18426 3' -55.1 NC_004681.1 + 69011 0.68 0.687673
Target:  5'- gGUGGCG-GCGGCcgUGAcgauGGUCAgCGCCu -3'
miRNA:   3'- -CACCGCgUGCUGuaGCU----CCAGU-GUGG- -5'
18426 3' -55.1 NC_004681.1 + 60817 0.7 0.570173
Target:  5'- -cGGCGUAgGuguCAcgCGGGGUCGCAUCc -3'
miRNA:   3'- caCCGCGUgCu--GUa-GCUCCAGUGUGG- -5'
18426 3' -55.1 NC_004681.1 + 46953 0.66 0.79887
Target:  5'- -aGGCGguUGAuCAUCGGGGU---GCCg -3'
miRNA:   3'- caCCGCguGCU-GUAGCUCCAgugUGG- -5'
18426 3' -55.1 NC_004681.1 + 39941 0.67 0.779739
Target:  5'- uUGGCGCGCG-CGggCGcGGUgCGCGCg -3'
miRNA:   3'- cACCGCGUGCuGUa-GCuCCA-GUGUGg -5'
18426 3' -55.1 NC_004681.1 + 11289 0.68 0.708756
Target:  5'- -aGGCGCA-GACcagcuucucugcGUUGGGGUUAgGCCg -3'
miRNA:   3'- caCCGCGUgCUG------------UAGCUCCAGUgUGG- -5'
18426 3' -55.1 NC_004681.1 + 9076 0.72 0.501696
Target:  5'- gGUGGCGC-CGACAgCGAGGagGCcgaggaggcggugaaGCCg -3'
miRNA:   3'- -CACCGCGuGCUGUaGCUCCagUG---------------UGG- -5'
18426 3' -55.1 NC_004681.1 + 7451 0.67 0.760027
Target:  5'- uUGGCGggaggcuucgcCGCGGCggCGGGGUCA-GCCc -3'
miRNA:   3'- cACCGC-----------GUGCUGuaGCUCCAGUgUGG- -5'
18426 3' -55.1 NC_004681.1 + 58866 0.72 0.497654
Target:  5'- -cGGUGCGCGugacacCAUCGGGGgucucCACGCUg -3'
miRNA:   3'- caCCGCGUGCu-----GUAGCUCCa----GUGUGG- -5'
18426 3' -55.1 NC_004681.1 + 58733 0.72 0.487616
Target:  5'- cGUGGCGCAgGACAccUUGAGGg---GCCg -3'
miRNA:   3'- -CACCGCGUgCUGU--AGCUCCagugUGG- -5'
18426 3' -55.1 NC_004681.1 + 66934 0.69 0.655695
Target:  5'- -cGGCugaaccacCACGAgguUGUCGAGGUCcACACCg -3'
miRNA:   3'- caCCGc-------GUGCU---GUAGCUCCAG-UGUGG- -5'
18426 3' -55.1 NC_004681.1 + 5274 0.68 0.708756
Target:  5'- -gGGCGCG-GACA---GGGUCugACCg -3'
miRNA:   3'- caCCGCGUgCUGUagcUCCAGugUGG- -5'
18426 3' -55.1 NC_004681.1 + 3028 0.66 0.826301
Target:  5'- -cGGCGCGCGugG-CGGugccGUCGC-CCa -3'
miRNA:   3'- caCCGCGUGCugUaGCUc---CAGUGuGG- -5'
18426 3' -55.1 NC_004681.1 + 50096 0.68 0.729552
Target:  5'- -cGGCGCGCGGgAUgGuGGUCu--CCa -3'
miRNA:   3'- caCCGCGUGCUgUAgCuCCAGuguGG- -5'
18426 3' -55.1 NC_004681.1 + 2435 0.67 0.779739
Target:  5'- uUGGCGCGCGGCAcgcaGAaGUgGgCGCCg -3'
miRNA:   3'- cACCGCGUGCUGUag--CUcCAgU-GUGG- -5'
18426 3' -55.1 NC_004681.1 + 16198 0.66 0.789383
Target:  5'- cGUGGCggcuguGCGCG-CcgCGGuGGUgACGCCa -3'
miRNA:   3'- -CACCG------CGUGCuGuaGCU-CCAgUGUGG- -5'
18426 3' -55.1 NC_004681.1 + 34705 0.66 0.808192
Target:  5'- -gGGcCGCAUcccCAUCGAGGUggaggaggcgUACACCg -3'
miRNA:   3'- caCC-GCGUGcu-GUAGCUCCA----------GUGUGG- -5'
18426 3' -55.1 NC_004681.1 + 7369 0.69 0.655695
Target:  5'- -cGGCGCAcuCGGCGcCGAGGUgGacgGCCg -3'
miRNA:   3'- caCCGCGU--GCUGUaGCUCCAgUg--UGG- -5'
18426 3' -55.1 NC_004681.1 + 47148 0.7 0.57441
Target:  5'- -gGGUGCGCGcucgugcacauccuCGUCGGGGUCGgGCUc -3'
miRNA:   3'- caCCGCGUGCu-------------GUAGCUCCAGUgUGG- -5'
18426 3' -55.1 NC_004681.1 + 22861 0.7 0.601036
Target:  5'- gGUGGgGUcgucaauGCGACAcUCGAGGuUCAC-CCg -3'
miRNA:   3'- -CACCgCG-------UGCUGU-AGCUCC-AGUGuGG- -5'
18426 3' -55.1 NC_004681.1 + 51001 0.66 0.817339
Target:  5'- -cGGCGU-CGACGUCGGGGa-GCucuuCCa -3'
miRNA:   3'- caCCGCGuGCUGUAGCUCCagUGu---GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.