miRNA display CGI


Results 41 - 60 of 75 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18426 3' -55.1 NC_004681.1 + 62234 0.7 0.612809
Target:  5'- cUGuGCGCGCG-CAUCGccaAGGUCuucguccaccGCGCCg -3'
miRNA:   3'- cAC-CGCGUGCuGUAGC---UCCAG----------UGUGG- -5'
18426 3' -55.1 NC_004681.1 + 46772 0.72 0.477674
Target:  5'- -cGcGCGCACGGCGUCacGGUCAUcCCg -3'
miRNA:   3'- caC-CGCGUGCUGUAGcuCCAGUGuGG- -5'
18426 3' -55.1 NC_004681.1 + 58774 0.72 0.477674
Target:  5'- aUGGUGuCACGcgcacCGUCGAGGcgCGCGCCc -3'
miRNA:   3'- cACCGC-GUGCu----GUAGCUCCa-GUGUGG- -5'
18426 3' -55.1 NC_004681.1 + 18737 0.7 0.602105
Target:  5'- -gGGCG-ACGGCggCGAGGcCGCGCg -3'
miRNA:   3'- caCCGCgUGCUGuaGCUCCaGUGUGg -5'
18426 3' -55.1 NC_004681.1 + 69235 0.72 0.487616
Target:  5'- aGUGGCcaGCGCGuCAUCGgcuGGGUCuguccgACACCu -3'
miRNA:   3'- -CACCG--CGUGCuGUAGC---UCCAG------UGUGG- -5'
18426 3' -55.1 NC_004681.1 + 24079 0.66 0.826301
Target:  5'- gGUGGCGC-CGugGgccagCaAGGUUccgGCGCCa -3'
miRNA:   3'- -CACCGCGuGCugUa----GcUCCAG---UGUGG- -5'
18426 3' -55.1 NC_004681.1 + 15949 0.69 0.623529
Target:  5'- cUGGCGCcaucuCGuuCAUUGGGGUguCGCCa -3'
miRNA:   3'- cACCGCGu----GCu-GUAGCUCCAguGUGG- -5'
18426 3' -55.1 NC_004681.1 + 12080 0.69 0.655695
Target:  5'- -aGGCcgaGUACGugGcCGAGGUC-CGCCc -3'
miRNA:   3'- caCCG---CGUGCugUaGCUCCAGuGUGG- -5'
18426 3' -55.1 NC_004681.1 + 27621 0.69 0.655695
Target:  5'- gGUGGCGCugGCGGCGgcggCGGcucuGGUCGCcgauCCa -3'
miRNA:   3'- -CACCGCG--UGCUGUa---GCU----CCAGUGu---GG- -5'
18426 3' -55.1 NC_004681.1 + 66953 0.66 0.817339
Target:  5'- -cGcGCGCcgagcucgaagGCGACAUCGGGGacagUCACgucgGCCu -3'
miRNA:   3'- caC-CGCG-----------UGCUGUAGCUCC----AGUG----UGG- -5'
18426 3' -55.1 NC_004681.1 + 32316 0.66 0.817339
Target:  5'- uUGGCGCuu--CGUCaAGGUC-CGCCa -3'
miRNA:   3'- cACCGCGugcuGUAGcUCCAGuGUGG- -5'
18426 3' -55.1 NC_004681.1 + 30261 0.66 0.79887
Target:  5'- -cGGCcgGUACGGCGUCGAGac--CACCg -3'
miRNA:   3'- caCCG--CGUGCUGUAGCUCcaguGUGG- -5'
18426 3' -55.1 NC_004681.1 + 24401 0.66 0.79887
Target:  5'- -aGGUGCuggaaaacgGCGACuUCGAgcuGGUC-CACCa -3'
miRNA:   3'- caCCGCG---------UGCUGuAGCU---CCAGuGUGG- -5'
18426 3' -55.1 NC_004681.1 + 20646 0.66 0.79887
Target:  5'- -gGGUGUccucggACuACAUCGAGGUCAcCGCg -3'
miRNA:   3'- caCCGCG------UGcUGUAGCUCCAGU-GUGg -5'
18426 3' -55.1 NC_004681.1 + 27828 0.66 0.786505
Target:  5'- gGUGGCGCAuccgucuucucaucCGGCAgCGucGUCAuUACCg -3'
miRNA:   3'- -CACCGCGU--------------GCUGUaGCucCAGU-GUGG- -5'
18426 3' -55.1 NC_004681.1 + 26253 0.66 0.789383
Target:  5'- gGUGGgGCAUGACGgacuccUCGGcGG-CAuCACCa -3'
miRNA:   3'- -CACCgCGUGCUGU------AGCU-CCaGU-GUGG- -5'
18426 3' -55.1 NC_004681.1 + 5105 0.67 0.760027
Target:  5'- aGUGGaggGCACGcuguuCGUUGAGcGUCACcCCg -3'
miRNA:   3'- -CACCg--CGUGCu----GUAGCUC-CAGUGuGG- -5'
18426 3' -55.1 NC_004681.1 + 18366 0.68 0.729552
Target:  5'- gGUGGCGCcauCGACAUgGcAGGcCAgGCg -3'
miRNA:   3'- -CACCGCGu--GCUGUAgC-UCCaGUgUGg -5'
18426 3' -55.1 NC_004681.1 + 4519 0.68 0.729552
Target:  5'- cGUGGUcuacgACGACAUCGAGG-CugACg -3'
miRNA:   3'- -CACCGcg---UGCUGUAGCUCCaGugUGg -5'
18426 3' -55.1 NC_004681.1 + 11867 0.69 0.659975
Target:  5'- -cGGCGCGCgcagcguaccGACGUCaccgaggacgacgaaGAGGUCAuguuCACCg -3'
miRNA:   3'- caCCGCGUG----------CUGUAG---------------CUCCAGU----GUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.