miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18427 3' -58.3 NC_004681.1 + 2031 0.66 0.612664
Target:  5'- uGGUCGUggaGGGCG-GCCgCAccGCGGACAu- -3'
miRNA:   3'- -CUAGUA---CCCGCuCGG-GU--CGCCUGUcu -5'
18427 3' -58.3 NC_004681.1 + 51733 0.66 0.612664
Target:  5'- uGGUCGUcGGCGGccGCCCcggcGCGGGCAaGAg -3'
miRNA:   3'- -CUAGUAcCCGCU--CGGGu---CGCCUGU-CU- -5'
18427 3' -58.3 NC_004681.1 + 1620 0.67 0.570358
Target:  5'- cGGUCAccagGGGUGAGUCCgaAGCgGGACGa- -3'
miRNA:   3'- -CUAGUa---CCCGCUCGGG--UCG-CCUGUcu -5'
18427 3' -58.3 NC_004681.1 + 31146 0.67 0.539094
Target:  5'- cAUCAUGcuGGacauCGAGUCCuggGGCGGGCAGAu -3'
miRNA:   3'- cUAGUAC--CC----GCUCGGG---UCGCCUGUCU- -5'
18427 3' -58.3 NC_004681.1 + 52494 0.67 0.528799
Target:  5'- gGAUCAcUGGGCGuGCCUAGaCGG-CGa- -3'
miRNA:   3'- -CUAGU-ACCCGCuCGGGUC-GCCuGUcu -5'
18427 3' -58.3 NC_004681.1 + 28590 0.68 0.508435
Target:  5'- --cCcgGGGUgaguguGAGCCCAGCcccGGGCGGGu -3'
miRNA:   3'- cuaGuaCCCG------CUCGGGUCG---CCUGUCU- -5'
18427 3' -58.3 NC_004681.1 + 6295 0.68 0.488409
Target:  5'- aGAUCAUGGGCcuGCC--GCGGuCGGAu -3'
miRNA:   3'- -CUAGUACCCGcuCGGguCGCCuGUCU- -5'
18427 3' -58.3 NC_004681.1 + 21207 0.69 0.459091
Target:  5'- cGUCAUGaGCGuGUCCAGCGGAUu-- -3'
miRNA:   3'- cUAGUACcCGCuCGGGUCGCCUGucu -5'
18427 3' -58.3 NC_004681.1 + 61831 0.69 0.459091
Target:  5'- cGcgCGaGGGCG-GCCUccuuGCGGACGGAc -3'
miRNA:   3'- -CuaGUaCCCGCuCGGGu---CGCCUGUCU- -5'
18427 3' -58.3 NC_004681.1 + 353 0.69 0.45334
Target:  5'- cGUCAUGGGCgccauccgcgaggacGAGCCC-GCGGucaAGAc -3'
miRNA:   3'- cUAGUACCCG---------------CUCGGGuCGCCug-UCU- -5'
18427 3' -58.3 NC_004681.1 + 36882 0.73 0.257775
Target:  5'- aGUCAgcgggGGGCGGG-CCAGCGGccugGCAGAc -3'
miRNA:   3'- cUAGUa----CCCGCUCgGGUCGCC----UGUCU- -5'
18427 3' -58.3 NC_004681.1 + 27445 1.08 0.000768
Target:  5'- uGAUCAUGGGCGAGCCCAGCGGACAGAa -3'
miRNA:   3'- -CUAGUACCCGCUCGGGUCGCCUGUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.