Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
18428 | 5' | -56.8 | NC_004681.1 | + | 41897 | 0.66 | 0.767409 |
Target: 5'- aGGCGgcGUCUUC--CACUgCGGCGCg -3' miRNA: 3'- cUUGCuaCAGGAGcaGUGGgGCCGCG- -5' |
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18428 | 5' | -56.8 | NC_004681.1 | + | 3050 | 0.66 | 0.767409 |
Target: 5'- --uCGggGUCCUCG-CuggugaaCUCGGCGCg -3' miRNA: 3'- cuuGCuaCAGGAGCaGug-----GGGCCGCG- -5' |
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18428 | 5' | -56.8 | NC_004681.1 | + | 67069 | 0.66 | 0.766435 |
Target: 5'- cGACGugacUGUCCccgaUGUCGCCUucgagcuCGGCGCg -3' miRNA: 3'- cUUGCu---ACAGGa---GCAGUGGG-------GCCGCG- -5' |
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18428 | 5' | -56.8 | NC_004681.1 | + | 19477 | 0.66 | 0.757607 |
Target: 5'- ---gGAUGUaCC-CGUCGCCCaggcCGGUGUg -3' miRNA: 3'- cuugCUACA-GGaGCAGUGGG----GCCGCG- -5' |
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18428 | 5' | -56.8 | NC_004681.1 | + | 46778 | 0.66 | 0.757607 |
Target: 5'- -cACGgcGUCacgGUCAUCCCGcGCGCc -3' miRNA: 3'- cuUGCuaCAGgagCAGUGGGGC-CGCG- -5' |
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18428 | 5' | -56.8 | NC_004681.1 | + | 39231 | 0.66 | 0.757607 |
Target: 5'- -cACGAUGagcgCCUUGUCGCggCGGuCGCg -3' miRNA: 3'- cuUGCUACa---GGAGCAGUGggGCC-GCG- -5' |
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18428 | 5' | -56.8 | NC_004681.1 | + | 39423 | 0.66 | 0.757607 |
Target: 5'- gGAGCcGUGUCCagcgCGgCGCCgCGcGCGCa -3' miRNA: 3'- -CUUGcUACAGGa---GCaGUGGgGC-CGCG- -5' |
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18428 | 5' | -56.8 | NC_004681.1 | + | 39088 | 0.66 | 0.747686 |
Target: 5'- uGACGccuUCCUCGUCGgccaCCCaGCGCa -3' miRNA: 3'- cUUGCuacAGGAGCAGUg---GGGcCGCG- -5' |
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18428 | 5' | -56.8 | NC_004681.1 | + | 18189 | 0.66 | 0.747686 |
Target: 5'- ---gGcgGUCCUgGagCGCcuCCCGGCGCa -3' miRNA: 3'- cuugCuaCAGGAgCa-GUG--GGGCCGCG- -5' |
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18428 | 5' | -56.8 | NC_004681.1 | + | 56531 | 0.66 | 0.744688 |
Target: 5'- uGACGAUGaCCUCG-CGgCCCGccuccaacagguguGCGCu -3' miRNA: 3'- cUUGCUACaGGAGCaGUgGGGC--------------CGCG- -5' |
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18428 | 5' | -56.8 | NC_004681.1 | + | 56198 | 0.66 | 0.737657 |
Target: 5'- --uCGG-GUCCUCGUUGCgUUCGGCGUc -3' miRNA: 3'- cuuGCUaCAGGAGCAGUG-GGGCCGCG- -5' |
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18428 | 5' | -56.8 | NC_004681.1 | + | 12446 | 0.66 | 0.737657 |
Target: 5'- uGACGAUcaCCgUCGagGCCCCGGC-Ca -3' miRNA: 3'- cUUGCUAcaGG-AGCagUGGGGCCGcG- -5' |
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18428 | 5' | -56.8 | NC_004681.1 | + | 7317 | 0.66 | 0.72753 |
Target: 5'- -cGCGGUGUCgC-CGUUACCggcaCCGGcCGCc -3' miRNA: 3'- cuUGCUACAG-GaGCAGUGG----GGCC-GCG- -5' |
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18428 | 5' | -56.8 | NC_004681.1 | + | 461 | 0.66 | 0.72753 |
Target: 5'- -cGCGGgcucGUCCUCGcggauggCGCCCaugaCGGUGCa -3' miRNA: 3'- cuUGCUa---CAGGAGCa------GUGGG----GCCGCG- -5' |
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18428 | 5' | -56.8 | NC_004681.1 | + | 48364 | 0.66 | 0.72753 |
Target: 5'- -uGCGcgGUCUUCucgGUCAgCCCGcGUGCc -3' miRNA: 3'- cuUGCuaCAGGAG---CAGUgGGGC-CGCG- -5' |
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18428 | 5' | -56.8 | NC_004681.1 | + | 13781 | 0.66 | 0.717316 |
Target: 5'- aGGACGgcGcCCccaagcUGUCGUCCCGGCGCu -3' miRNA: 3'- -CUUGCuaCaGGa-----GCAGUGGGGCCGCG- -5' |
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18428 | 5' | -56.8 | NC_004681.1 | + | 1251 | 0.66 | 0.71629 |
Target: 5'- --cCGAUGgggaaCUCGUgGCCCCcgacaugucggagGGCGCc -3' miRNA: 3'- cuuGCUACag---GAGCAgUGGGG-------------CCGCG- -5' |
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18428 | 5' | -56.8 | NC_004681.1 | + | 53560 | 0.67 | 0.707024 |
Target: 5'- --uCGAUGUCUUCGUUGCCgaGG-GCu -3' miRNA: 3'- cuuGCUACAGGAGCAGUGGggCCgCG- -5' |
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18428 | 5' | -56.8 | NC_004681.1 | + | 47210 | 0.67 | 0.707024 |
Target: 5'- --uCGgcGUUCUCGUCGCUCagCGGCGg -3' miRNA: 3'- cuuGCuaCAGGAGCAGUGGG--GCCGCg -5' |
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18428 | 5' | -56.8 | NC_004681.1 | + | 67478 | 0.67 | 0.684158 |
Target: 5'- uGAGCGAcGUUCUUGUC-CCCguacuugaaccaGGCGCc -3' miRNA: 3'- -CUUGCUaCAGGAGCAGuGGGg-----------CCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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