Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
18428 | 5' | -56.8 | NC_004681.1 | + | 28338 | 1.11 | 0.000936 |
Target: 5'- cGAACGAUGUCCUCGUCACCCCGGCGCc -3' miRNA: 3'- -CUUGCUACAGGAGCAGUGGGGCCGCG- -5' |
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18428 | 5' | -56.8 | NC_004681.1 | + | 51724 | 0.75 | 0.286261 |
Target: 5'- gGAACcuGGUgGUCgUCGgcggcCGCCCCGGCGCg -3' miRNA: 3'- -CUUG--CUA-CAGgAGCa----GUGGGGCCGCG- -5' |
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18428 | 5' | -56.8 | NC_004681.1 | + | 13333 | 0.74 | 0.32247 |
Target: 5'- cGGCGAaGUCUUCGUCAUCCCGcaucCGCu -3' miRNA: 3'- cUUGCUaCAGGAGCAGUGGGGCc---GCG- -5' |
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18428 | 5' | -56.8 | NC_004681.1 | + | 62366 | 0.73 | 0.361991 |
Target: 5'- cGGCGGUGaUCUUG-C-CCCCGGCGCg -3' miRNA: 3'- cUUGCUACaGGAGCaGuGGGGCCGCG- -5' |
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18428 | 5' | -56.8 | NC_004681.1 | + | 5114 | 0.72 | 0.42273 |
Target: 5'- -cACGcUGUUCguugagCGUCACCCCGGCc- -3' miRNA: 3'- cuUGCuACAGGa-----GCAGUGGGGCCGcg -5' |
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18428 | 5' | -56.8 | NC_004681.1 | + | 65313 | 0.71 | 0.431895 |
Target: 5'- aGGAUGAccGUCCUcCGUCGacUCCCGGCGa -3' miRNA: 3'- -CUUGCUa-CAGGA-GCAGU--GGGGCCGCg -5' |
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18428 | 5' | -56.8 | NC_004681.1 | + | 15583 | 0.71 | 0.450569 |
Target: 5'- uGACcGUGUUCUCGUCACUguUCGGCGa -3' miRNA: 3'- cUUGcUACAGGAGCAGUGG--GGCCGCg -5' |
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18428 | 5' | -56.8 | NC_004681.1 | + | 58992 | 0.71 | 0.441176 |
Target: 5'- --uCGAUGUCCUCGUCAgCgagaagCUGGCGa -3' miRNA: 3'- cuuGCUACAGGAGCAGUgG------GGCCGCg -5' |
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18428 | 5' | -56.8 | NC_004681.1 | + | 33410 | 0.71 | 0.431895 |
Target: 5'- cGGCGAacGUCCcggCGUaCACCgCGGCGCg -3' miRNA: 3'- cUUGCUa-CAGGa--GCA-GUGGgGCCGCG- -5' |
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18428 | 5' | -56.8 | NC_004681.1 | + | 6697 | 0.7 | 0.529292 |
Target: 5'- --uUGAUGUCCUUGcCgcgGCCCaUGGCGCc -3' miRNA: 3'- cuuGCUACAGGAGCaG---UGGG-GCCGCG- -5' |
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18428 | 5' | -56.8 | NC_004681.1 | + | 66906 | 0.7 | 0.533371 |
Target: 5'- uGGCGAgcUGUCCaucgUCGUCguugacucuguggcgGCCCUGGUGCc -3' miRNA: 3'- cUUGCU--ACAGG----AGCAG---------------UGGGGCCGCG- -5' |
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18428 | 5' | -56.8 | NC_004681.1 | + | 23875 | 0.69 | 0.570539 |
Target: 5'- -uGCGGUGgcuUCCUCgGUCACCUCGaUGCg -3' miRNA: 3'- cuUGCUAC---AGGAG-CAGUGGGGCcGCG- -5' |
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18428 | 5' | -56.8 | NC_004681.1 | + | 47495 | 0.69 | 0.570539 |
Target: 5'- uGACGAcGUCgCaggaccgCGUCGCCgUGGCGCg -3' miRNA: 3'- cUUGCUaCAG-Ga------GCAGUGGgGCCGCG- -5' |
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18428 | 5' | -56.8 | NC_004681.1 | + | 22384 | 0.69 | 0.570539 |
Target: 5'- cGACGucgaGUGgacgCUgGUCACCCCGGcCGCg -3' miRNA: 3'- cUUGC----UACag--GAgCAGUGGGGCC-GCG- -5' |
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18428 | 5' | -56.8 | NC_004681.1 | + | 18338 | 0.68 | 0.644198 |
Target: 5'- uGGCGGUGgcgggCUCGgguUCACCCCcgguGGCGCc -3' miRNA: 3'- cUUGCUACag---GAGC---AGUGGGG----CCGCG- -5' |
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18428 | 5' | -56.8 | NC_004681.1 | + | 38463 | 0.67 | 0.675783 |
Target: 5'- uGggUGAUGgucaUCUUCGUCcUCCUGGUGUu -3' miRNA: 3'- -CuuGCUAC----AGGAGCAGuGGGGCCGCG- -5' |
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18428 | 5' | -56.8 | NC_004681.1 | + | 11999 | 0.67 | 0.675783 |
Target: 5'- cGGCGGUGaacaugaccUCUUCGUCGuCCUCGGUGa -3' miRNA: 3'- cUUGCUAC---------AGGAGCAGU-GGGGCCGCg -5' |
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18428 | 5' | -56.8 | NC_004681.1 | + | 59087 | 0.67 | 0.66528 |
Target: 5'- -cACGAgGUCUUCGagCACCUgGGCGg -3' miRNA: 3'- cuUGCUaCAGGAGCa-GUGGGgCCGCg -5' |
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18428 | 5' | -56.8 | NC_004681.1 | + | 28806 | 0.67 | 0.675783 |
Target: 5'- cGAACGGcagCCUCGUCAUauaCCgacuggcaGGCGCa -3' miRNA: 3'- -CUUGCUacaGGAGCAGUGg--GG--------CCGCG- -5' |
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18428 | 5' | -56.8 | NC_004681.1 | + | 44758 | 0.67 | 0.654749 |
Target: 5'- aGGAgGGUGUCCUUGgcCugCaCGGUGCa -3' miRNA: 3'- -CUUgCUACAGGAGCa-GugGgGCCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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