Results 1 - 20 of 40 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18428 | 5' | -56.8 | NC_004681.1 | + | 461 | 0.66 | 0.72753 |
Target: 5'- -cGCGGgcucGUCCUCGcggauggCGCCCaugaCGGUGCa -3' miRNA: 3'- cuUGCUa---CAGGAGCa------GUGGG----GCCGCG- -5' |
|||||||
18428 | 5' | -56.8 | NC_004681.1 | + | 1251 | 0.66 | 0.71629 |
Target: 5'- --cCGAUGgggaaCUCGUgGCCCCcgacaugucggagGGCGCc -3' miRNA: 3'- cuuGCUACag---GAGCAgUGGGG-------------CCGCG- -5' |
|||||||
18428 | 5' | -56.8 | NC_004681.1 | + | 3050 | 0.66 | 0.767409 |
Target: 5'- --uCGggGUCCUCG-CuggugaaCUCGGCGCg -3' miRNA: 3'- cuuGCuaCAGGAGCaGug-----GGGCCGCG- -5' |
|||||||
18428 | 5' | -56.8 | NC_004681.1 | + | 5114 | 0.72 | 0.42273 |
Target: 5'- -cACGcUGUUCguugagCGUCACCCCGGCc- -3' miRNA: 3'- cuUGCuACAGGa-----GCAGUGGGGCCGcg -5' |
|||||||
18428 | 5' | -56.8 | NC_004681.1 | + | 6697 | 0.7 | 0.529292 |
Target: 5'- --uUGAUGUCCUUGcCgcgGCCCaUGGCGCc -3' miRNA: 3'- cuuGCUACAGGAGCaG---UGGG-GCCGCG- -5' |
|||||||
18428 | 5' | -56.8 | NC_004681.1 | + | 7317 | 0.66 | 0.72753 |
Target: 5'- -cGCGGUGUCgC-CGUUACCggcaCCGGcCGCc -3' miRNA: 3'- cuUGCUACAG-GaGCAGUGG----GGCC-GCG- -5' |
|||||||
18428 | 5' | -56.8 | NC_004681.1 | + | 11999 | 0.67 | 0.675783 |
Target: 5'- cGGCGGUGaacaugaccUCUUCGUCGuCCUCGGUGa -3' miRNA: 3'- cUUGCUAC---------AGGAGCAGU-GGGGCCGCg -5' |
|||||||
18428 | 5' | -56.8 | NC_004681.1 | + | 12446 | 0.66 | 0.737657 |
Target: 5'- uGACGAUcaCCgUCGagGCCCCGGC-Ca -3' miRNA: 3'- cUUGCUAcaGG-AGCagUGGGGCCGcG- -5' |
|||||||
18428 | 5' | -56.8 | NC_004681.1 | + | 13333 | 0.74 | 0.32247 |
Target: 5'- cGGCGAaGUCUUCGUCAUCCCGcaucCGCu -3' miRNA: 3'- cUUGCUaCAGGAGCAGUGGGGCc---GCG- -5' |
|||||||
18428 | 5' | -56.8 | NC_004681.1 | + | 13781 | 0.66 | 0.717316 |
Target: 5'- aGGACGgcGcCCccaagcUGUCGUCCCGGCGCu -3' miRNA: 3'- -CUUGCuaCaGGa-----GCAGUGGGGCCGCG- -5' |
|||||||
18428 | 5' | -56.8 | NC_004681.1 | + | 15583 | 0.71 | 0.450569 |
Target: 5'- uGACcGUGUUCUCGUCACUguUCGGCGa -3' miRNA: 3'- cUUGcUACAGGAGCAGUGG--GGCCGCg -5' |
|||||||
18428 | 5' | -56.8 | NC_004681.1 | + | 18189 | 0.66 | 0.747686 |
Target: 5'- ---gGcgGUCCUgGagCGCcuCCCGGCGCa -3' miRNA: 3'- cuugCuaCAGGAgCa-GUG--GGGCCGCG- -5' |
|||||||
18428 | 5' | -56.8 | NC_004681.1 | + | 18338 | 0.68 | 0.644198 |
Target: 5'- uGGCGGUGgcgggCUCGgguUCACCCCcgguGGCGCc -3' miRNA: 3'- cUUGCUACag---GAGC---AGUGGGG----CCGCG- -5' |
|||||||
18428 | 5' | -56.8 | NC_004681.1 | + | 19477 | 0.66 | 0.757607 |
Target: 5'- ---gGAUGUaCC-CGUCGCCCaggcCGGUGUg -3' miRNA: 3'- cuugCUACA-GGaGCAGUGGG----GCCGCG- -5' |
|||||||
18428 | 5' | -56.8 | NC_004681.1 | + | 22384 | 0.69 | 0.570539 |
Target: 5'- cGACGucgaGUGgacgCUgGUCACCCCGGcCGCg -3' miRNA: 3'- cUUGC----UACag--GAgCAGUGGGGCC-GCG- -5' |
|||||||
18428 | 5' | -56.8 | NC_004681.1 | + | 23875 | 0.69 | 0.570539 |
Target: 5'- -uGCGGUGgcuUCCUCgGUCACCUCGaUGCg -3' miRNA: 3'- cuUGCUAC---AGGAG-CAGUGGGGCcGCG- -5' |
|||||||
18428 | 5' | -56.8 | NC_004681.1 | + | 28338 | 1.11 | 0.000936 |
Target: 5'- cGAACGAUGUCCUCGUCACCCCGGCGCc -3' miRNA: 3'- -CUUGCUACAGGAGCAGUGGGGCCGCG- -5' |
|||||||
18428 | 5' | -56.8 | NC_004681.1 | + | 28806 | 0.67 | 0.675783 |
Target: 5'- cGAACGGcagCCUCGUCAUauaCCgacuggcaGGCGCa -3' miRNA: 3'- -CUUGCUacaGGAGCAGUGg--GG--------CCGCG- -5' |
|||||||
18428 | 5' | -56.8 | NC_004681.1 | + | 33410 | 0.71 | 0.431895 |
Target: 5'- cGGCGAacGUCCcggCGUaCACCgCGGCGCg -3' miRNA: 3'- cUUGCUa-CAGGa--GCA-GUGGgGCCGCG- -5' |
|||||||
18428 | 5' | -56.8 | NC_004681.1 | + | 38463 | 0.67 | 0.675783 |
Target: 5'- uGggUGAUGgucaUCUUCGUCcUCCUGGUGUu -3' miRNA: 3'- -CuuGCUAC----AGGAGCAGuGGGGCCGCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home