miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18428 5' -56.8 NC_004681.1 + 67478 0.67 0.684158
Target:  5'- uGAGCGAcGUUCUUGUC-CCCguacuugaaccaGGCGCc -3'
miRNA:   3'- -CUUGCUaCAGGAGCAGuGGGg-----------CCGCG- -5'
18428 5' -56.8 NC_004681.1 + 67069 0.66 0.766435
Target:  5'- cGACGugacUGUCCccgaUGUCGCCUucgagcuCGGCGCg -3'
miRNA:   3'- cUUGCu---ACAGGa---GCAGUGGG-------GCCGCG- -5'
18428 5' -56.8 NC_004681.1 + 66906 0.7 0.533371
Target:  5'- uGGCGAgcUGUCCaucgUCGUCguugacucuguggcgGCCCUGGUGCc -3'
miRNA:   3'- cUUGCU--ACAGG----AGCAG---------------UGGGGCCGCG- -5'
18428 5' -56.8 NC_004681.1 + 65313 0.71 0.431895
Target:  5'- aGGAUGAccGUCCUcCGUCGacUCCCGGCGa -3'
miRNA:   3'- -CUUGCUa-CAGGA-GCAGU--GGGGCCGCg -5'
18428 5' -56.8 NC_004681.1 + 62366 0.73 0.361991
Target:  5'- cGGCGGUGaUCUUG-C-CCCCGGCGCg -3'
miRNA:   3'- cUUGCUACaGGAGCaGuGGGGCCGCG- -5'
18428 5' -56.8 NC_004681.1 + 59087 0.67 0.66528
Target:  5'- -cACGAgGUCUUCGagCACCUgGGCGg -3'
miRNA:   3'- cuUGCUaCAGGAGCa-GUGGGgCCGCg -5'
18428 5' -56.8 NC_004681.1 + 58992 0.71 0.441176
Target:  5'- --uCGAUGUCCUCGUCAgCgagaagCUGGCGa -3'
miRNA:   3'- cuuGCUACAGGAGCAGUgG------GGCCGCg -5'
18428 5' -56.8 NC_004681.1 + 56531 0.66 0.744688
Target:  5'- uGACGAUGaCCUCG-CGgCCCGccuccaacagguguGCGCu -3'
miRNA:   3'- cUUGCUACaGGAGCaGUgGGGC--------------CGCG- -5'
18428 5' -56.8 NC_004681.1 + 56198 0.66 0.737657
Target:  5'- --uCGG-GUCCUCGUUGCgUUCGGCGUc -3'
miRNA:   3'- cuuGCUaCAGGAGCAGUG-GGGCCGCG- -5'
18428 5' -56.8 NC_004681.1 + 53560 0.67 0.707024
Target:  5'- --uCGAUGUCUUCGUUGCCgaGG-GCu -3'
miRNA:   3'- cuuGCUACAGGAGCAGUGGggCCgCG- -5'
18428 5' -56.8 NC_004681.1 + 51724 0.75 0.286261
Target:  5'- gGAACcuGGUgGUCgUCGgcggcCGCCCCGGCGCg -3'
miRNA:   3'- -CUUG--CUA-CAGgAGCa----GUGGGGCCGCG- -5'
18428 5' -56.8 NC_004681.1 + 48364 0.66 0.72753
Target:  5'- -uGCGcgGUCUUCucgGUCAgCCCGcGUGCc -3'
miRNA:   3'- cuUGCuaCAGGAG---CAGUgGGGC-CGCG- -5'
18428 5' -56.8 NC_004681.1 + 47495 0.69 0.570539
Target:  5'- uGACGAcGUCgCaggaccgCGUCGCCgUGGCGCg -3'
miRNA:   3'- cUUGCUaCAG-Ga------GCAGUGGgGCCGCG- -5'
18428 5' -56.8 NC_004681.1 + 47210 0.67 0.707024
Target:  5'- --uCGgcGUUCUCGUCGCUCagCGGCGg -3'
miRNA:   3'- cuuGCuaCAGGAGCAGUGGG--GCCGCg -5'
18428 5' -56.8 NC_004681.1 + 46778 0.66 0.757607
Target:  5'- -cACGgcGUCacgGUCAUCCCGcGCGCc -3'
miRNA:   3'- cuUGCuaCAGgagCAGUGGGGC-CGCG- -5'
18428 5' -56.8 NC_004681.1 + 44758 0.67 0.654749
Target:  5'- aGGAgGGUGUCCUUGgcCugCaCGGUGCa -3'
miRNA:   3'- -CUUgCUACAGGAGCa-GugGgGCCGCG- -5'
18428 5' -56.8 NC_004681.1 + 41897 0.66 0.767409
Target:  5'- aGGCGgcGUCUUC--CACUgCGGCGCg -3'
miRNA:   3'- cUUGCuaCAGGAGcaGUGGgGCCGCG- -5'
18428 5' -56.8 NC_004681.1 + 39423 0.66 0.757607
Target:  5'- gGAGCcGUGUCCagcgCGgCGCCgCGcGCGCa -3'
miRNA:   3'- -CUUGcUACAGGa---GCaGUGGgGC-CGCG- -5'
18428 5' -56.8 NC_004681.1 + 39231 0.66 0.757607
Target:  5'- -cACGAUGagcgCCUUGUCGCggCGGuCGCg -3'
miRNA:   3'- cuUGCUACa---GGAGCAGUGggGCC-GCG- -5'
18428 5' -56.8 NC_004681.1 + 39088 0.66 0.747686
Target:  5'- uGACGccuUCCUCGUCGgccaCCCaGCGCa -3'
miRNA:   3'- cUUGCuacAGGAGCAGUg---GGGcCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.