miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18428 5' -56.8 NC_004681.1 + 28338 1.11 0.000936
Target:  5'- cGAACGAUGUCCUCGUCACCCCGGCGCc -3'
miRNA:   3'- -CUUGCUACAGGAGCAGUGGGGCCGCG- -5'
18428 5' -56.8 NC_004681.1 + 46778 0.66 0.757607
Target:  5'- -cACGgcGUCacgGUCAUCCCGcGCGCc -3'
miRNA:   3'- cuUGCuaCAGgagCAGUGGGGC-CGCG- -5'
18428 5' -56.8 NC_004681.1 + 18189 0.66 0.747686
Target:  5'- ---gGcgGUCCUgGagCGCcuCCCGGCGCa -3'
miRNA:   3'- cuugCuaCAGGAgCa-GUG--GGGCCGCG- -5'
18428 5' -56.8 NC_004681.1 + 12446 0.66 0.737657
Target:  5'- uGACGAUcaCCgUCGagGCCCCGGC-Ca -3'
miRNA:   3'- cUUGCUAcaGG-AGCagUGGGGCCGcG- -5'
18428 5' -56.8 NC_004681.1 + 13781 0.66 0.717316
Target:  5'- aGGACGgcGcCCccaagcUGUCGUCCCGGCGCu -3'
miRNA:   3'- -CUUGCuaCaGGa-----GCAGUGGGGCCGCG- -5'
18428 5' -56.8 NC_004681.1 + 1251 0.66 0.71629
Target:  5'- --cCGAUGgggaaCUCGUgGCCCCcgacaugucggagGGCGCc -3'
miRNA:   3'- cuuGCUACag---GAGCAgUGGGG-------------CCGCG- -5'
18428 5' -56.8 NC_004681.1 + 28806 0.67 0.675783
Target:  5'- cGAACGGcagCCUCGUCAUauaCCgacuggcaGGCGCa -3'
miRNA:   3'- -CUUGCUacaGGAGCAGUGg--GG--------CCGCG- -5'
18428 5' -56.8 NC_004681.1 + 18338 0.68 0.644198
Target:  5'- uGGCGGUGgcgggCUCGgguUCACCCCcgguGGCGCc -3'
miRNA:   3'- cUUGCUACag---GAGC---AGUGGGG----CCGCG- -5'
18428 5' -56.8 NC_004681.1 + 22384 0.69 0.570539
Target:  5'- cGACGucgaGUGgacgCUgGUCACCCCGGcCGCg -3'
miRNA:   3'- cUUGC----UACag--GAgCAGUGGGGCC-GCG- -5'
18428 5' -56.8 NC_004681.1 + 51724 0.75 0.286261
Target:  5'- gGAACcuGGUgGUCgUCGgcggcCGCCCCGGCGCg -3'
miRNA:   3'- -CUUG--CUA-CAGgAGCa----GUGGGGCCGCG- -5'
18428 5' -56.8 NC_004681.1 + 13333 0.74 0.32247
Target:  5'- cGGCGAaGUCUUCGUCAUCCCGcaucCGCu -3'
miRNA:   3'- cUUGCUaCAGGAGCAGUGGGGCc---GCG- -5'
18428 5' -56.8 NC_004681.1 + 5114 0.72 0.42273
Target:  5'- -cACGcUGUUCguugagCGUCACCCCGGCc- -3'
miRNA:   3'- cuUGCuACAGGa-----GCAGUGGGGCCGcg -5'
18428 5' -56.8 NC_004681.1 + 65313 0.71 0.431895
Target:  5'- aGGAUGAccGUCCUcCGUCGacUCCCGGCGa -3'
miRNA:   3'- -CUUGCUa-CAGGA-GCAGU--GGGGCCGCg -5'
18428 5' -56.8 NC_004681.1 + 15583 0.71 0.450569
Target:  5'- uGACcGUGUUCUCGUCACUguUCGGCGa -3'
miRNA:   3'- cUUGcUACAGGAGCAGUGG--GGCCGCg -5'
18428 5' -56.8 NC_004681.1 + 66906 0.7 0.533371
Target:  5'- uGGCGAgcUGUCCaucgUCGUCguugacucuguggcgGCCCUGGUGCc -3'
miRNA:   3'- cUUGCU--ACAGG----AGCAG---------------UGGGGCCGCG- -5'
18428 5' -56.8 NC_004681.1 + 3050 0.66 0.767409
Target:  5'- --uCGggGUCCUCG-CuggugaaCUCGGCGCg -3'
miRNA:   3'- cuuGCuaCAGGAGCaGug-----GGGCCGCG- -5'
18428 5' -56.8 NC_004681.1 + 33410 0.71 0.431895
Target:  5'- cGGCGAacGUCCcggCGUaCACCgCGGCGCg -3'
miRNA:   3'- cUUGCUa-CAGGa--GCA-GUGGgGCCGCG- -5'
18428 5' -56.8 NC_004681.1 + 58992 0.71 0.441176
Target:  5'- --uCGAUGUCCUCGUCAgCgagaagCUGGCGa -3'
miRNA:   3'- cuuGCUACAGGAGCAGUgG------GGCCGCg -5'
18428 5' -56.8 NC_004681.1 + 6697 0.7 0.529292
Target:  5'- --uUGAUGUCCUUGcCgcgGCCCaUGGCGCc -3'
miRNA:   3'- cuuGCUACAGGAGCaG---UGGG-GCCGCG- -5'
18428 5' -56.8 NC_004681.1 + 23875 0.69 0.570539
Target:  5'- -uGCGGUGgcuUCCUCgGUCACCUCGaUGCg -3'
miRNA:   3'- cuUGCUAC---AGGAG-CAGUGGGGCcGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.