Results 21 - 40 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18428 | 5' | -56.8 | NC_004681.1 | + | 39088 | 0.66 | 0.747686 |
Target: 5'- uGACGccuUCCUCGUCGgccaCCCaGCGCa -3' miRNA: 3'- cUUGCuacAGGAGCAGUg---GGGcCGCG- -5' |
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18428 | 5' | -56.8 | NC_004681.1 | + | 39231 | 0.66 | 0.757607 |
Target: 5'- -cACGAUGagcgCCUUGUCGCggCGGuCGCg -3' miRNA: 3'- cuUGCUACa---GGAGCAGUGggGCC-GCG- -5' |
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18428 | 5' | -56.8 | NC_004681.1 | + | 39423 | 0.66 | 0.757607 |
Target: 5'- gGAGCcGUGUCCagcgCGgCGCCgCGcGCGCa -3' miRNA: 3'- -CUUGcUACAGGa---GCaGUGGgGC-CGCG- -5' |
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18428 | 5' | -56.8 | NC_004681.1 | + | 19477 | 0.66 | 0.757607 |
Target: 5'- ---gGAUGUaCC-CGUCGCCCaggcCGGUGUg -3' miRNA: 3'- cuugCUACA-GGaGCAGUGGG----GCCGCG- -5' |
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18428 | 5' | -56.8 | NC_004681.1 | + | 67069 | 0.66 | 0.766435 |
Target: 5'- cGACGugacUGUCCccgaUGUCGCCUucgagcuCGGCGCg -3' miRNA: 3'- cUUGCu---ACAGGa---GCAGUGGG-------GCCGCG- -5' |
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18428 | 5' | -56.8 | NC_004681.1 | + | 41897 | 0.66 | 0.767409 |
Target: 5'- aGGCGgcGUCUUC--CACUgCGGCGCg -3' miRNA: 3'- cUUGCuaCAGGAGcaGUGGgGCCGCG- -5' |
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18428 | 5' | -56.8 | NC_004681.1 | + | 47210 | 0.67 | 0.707024 |
Target: 5'- --uCGgcGUUCUCGUCGCUCagCGGCGg -3' miRNA: 3'- cuuGCuaCAGGAGCAGUGGG--GCCGCg -5' |
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18428 | 5' | -56.8 | NC_004681.1 | + | 53560 | 0.67 | 0.707024 |
Target: 5'- --uCGAUGUCUUCGUUGCCgaGG-GCu -3' miRNA: 3'- cuuGCUACAGGAGCAGUGGggCCgCG- -5' |
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18428 | 5' | -56.8 | NC_004681.1 | + | 62366 | 0.73 | 0.361991 |
Target: 5'- cGGCGGUGaUCUUG-C-CCCCGGCGCg -3' miRNA: 3'- cUUGCUACaGGAGCaGuGGGGCCGCG- -5' |
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18428 | 5' | -56.8 | NC_004681.1 | + | 33410 | 0.71 | 0.431895 |
Target: 5'- cGGCGAacGUCCcggCGUaCACCgCGGCGCg -3' miRNA: 3'- cUUGCUa-CAGGa--GCA-GUGGgGCCGCG- -5' |
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18428 | 5' | -56.8 | NC_004681.1 | + | 58992 | 0.71 | 0.441176 |
Target: 5'- --uCGAUGUCCUCGUCAgCgagaagCUGGCGa -3' miRNA: 3'- cuuGCUACAGGAGCAGUgG------GGCCGCg -5' |
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18428 | 5' | -56.8 | NC_004681.1 | + | 6697 | 0.7 | 0.529292 |
Target: 5'- --uUGAUGUCCUUGcCgcgGCCCaUGGCGCc -3' miRNA: 3'- cuuGCUACAGGAGCaG---UGGG-GCCGCG- -5' |
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18428 | 5' | -56.8 | NC_004681.1 | + | 23875 | 0.69 | 0.570539 |
Target: 5'- -uGCGGUGgcuUCCUCgGUCACCUCGaUGCg -3' miRNA: 3'- cuUGCUAC---AGGAG-CAGUGGGGCcGCG- -5' |
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18428 | 5' | -56.8 | NC_004681.1 | + | 47495 | 0.69 | 0.570539 |
Target: 5'- uGACGAcGUCgCaggaccgCGUCGCCgUGGCGCg -3' miRNA: 3'- cUUGCUaCAG-Ga------GCAGUGGgGCCGCG- -5' |
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18428 | 5' | -56.8 | NC_004681.1 | + | 44758 | 0.67 | 0.654749 |
Target: 5'- aGGAgGGUGUCCUUGgcCugCaCGGUGCa -3' miRNA: 3'- -CUUgCUACAGGAGCa-GugGgGCCGCG- -5' |
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18428 | 5' | -56.8 | NC_004681.1 | + | 59087 | 0.67 | 0.66528 |
Target: 5'- -cACGAgGUCUUCGagCACCUgGGCGg -3' miRNA: 3'- cuUGCUaCAGGAGCa-GUGGGgCCGCg -5' |
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18428 | 5' | -56.8 | NC_004681.1 | + | 38463 | 0.67 | 0.675783 |
Target: 5'- uGggUGAUGgucaUCUUCGUCcUCCUGGUGUu -3' miRNA: 3'- -CuuGCUAC----AGGAGCAGuGGGGCCGCG- -5' |
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18428 | 5' | -56.8 | NC_004681.1 | + | 11999 | 0.67 | 0.675783 |
Target: 5'- cGGCGGUGaacaugaccUCUUCGUCGuCCUCGGUGa -3' miRNA: 3'- cUUGCUAC---------AGGAGCAGU-GGGGCCGCg -5' |
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18428 | 5' | -56.8 | NC_004681.1 | + | 67478 | 0.67 | 0.684158 |
Target: 5'- uGAGCGAcGUUCUUGUC-CCCguacuugaaccaGGCGCc -3' miRNA: 3'- -CUUGCUaCAGGAGCAGuGGGg-----------CCGCG- -5' |
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18428 | 5' | -56.8 | NC_004681.1 | + | 3050 | 0.66 | 0.767409 |
Target: 5'- --uCGggGUCCUCG-CuggugaaCUCGGCGCg -3' miRNA: 3'- cuuGCuaCAGGAGCaGug-----GGGCCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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