miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18429 3' -45 NC_004681.1 + 59450 0.66 0.999748
Target:  5'- -aAGgGCAccuGGGGA--GGCGUCAGCUa -3'
miRNA:   3'- caUUgCGU---UCCCUaaUUGUAGUUGGg -5'
18429 3' -45 NC_004681.1 + 60186 0.66 0.999748
Target:  5'- -gAGCGCGAGGuGAUcGGCAcCcGCCg -3'
miRNA:   3'- caUUGCGUUCC-CUAaUUGUaGuUGGg -5'
18429 3' -45 NC_004681.1 + 58538 0.66 0.999748
Target:  5'- uUGACGUggGcgccGGucUUGGCGUCGGCCg -3'
miRNA:   3'- cAUUGCGuuC----CCu-AAUUGUAGUUGGg -5'
18429 3' -45 NC_004681.1 + 39426 0.66 0.999674
Target:  5'- -cGAUGCGGGGGugccaGGCuUCcACCCg -3'
miRNA:   3'- caUUGCGUUCCCuaa--UUGuAGuUGGG- -5'
18429 3' -45 NC_004681.1 + 32058 0.66 0.999674
Target:  5'- -cAGCGCAAGGaa--GGCGUCcucgagaagcugGACCCg -3'
miRNA:   3'- caUUGCGUUCCcuaaUUGUAG------------UUGGG- -5'
18429 3' -45 NC_004681.1 + 22936 0.66 0.999674
Target:  5'- -gAACGC-GGGGAUgagGAuCAUCGgaggcggggucGCCCc -3'
miRNA:   3'- caUUGCGuUCCCUAa--UU-GUAGU-----------UGGG- -5'
18429 3' -45 NC_004681.1 + 43782 0.66 0.999666
Target:  5'- -cAGgGCAGGGGAUUugccuccuuccacGAgGUCcgcGCCCa -3'
miRNA:   3'- caUUgCGUUCCCUAA-------------UUgUAGu--UGGG- -5'
18429 3' -45 NC_004681.1 + 68734 0.66 0.999582
Target:  5'- aUGAgGCAGGGGA--AGCAcuugguGCCCu -3'
miRNA:   3'- cAUUgCGUUCCCUaaUUGUagu---UGGG- -5'
18429 3' -45 NC_004681.1 + 64945 0.66 0.999582
Target:  5'- -cGACGCGccuGGAgcugGACGUCuacuACCCg -3'
miRNA:   3'- caUUGCGUuc-CCUaa--UUGUAGu---UGGG- -5'
18429 3' -45 NC_004681.1 + 66969 0.66 0.999582
Target:  5'- -aGGCGaCAucGGGGAcagucACGUCGGCCUg -3'
miRNA:   3'- caUUGC-GU--UCCCUaau--UGUAGUUGGG- -5'
18429 3' -45 NC_004681.1 + 49199 0.66 0.999468
Target:  5'- -cGACGCAguugcgugcGGaGGAUgcccGCGUCAggguGCCCg -3'
miRNA:   3'- caUUGCGU---------UC-CCUAau--UGUAGU----UGGG- -5'
18429 3' -45 NC_004681.1 + 44954 0.66 0.999455
Target:  5'- cGUGACGUAGGGGA---ACAUgGagaagaaGCCg -3'
miRNA:   3'- -CAUUGCGUUCCCUaauUGUAgU-------UGGg -5'
18429 3' -45 NC_004681.1 + 55946 0.67 0.999327
Target:  5'- -gAACuCAAGGGAUUGGa--CAACCUc -3'
miRNA:   3'- caUUGcGUUCCCUAAUUguaGUUGGG- -5'
18429 3' -45 NC_004681.1 + 57931 0.67 0.999156
Target:  5'- -aAGCGaGAGGGAggGGC--CAGCCCc -3'
miRNA:   3'- caUUGCgUUCCCUaaUUGuaGUUGGG- -5'
18429 3' -45 NC_004681.1 + 24129 0.67 0.999137
Target:  5'- -gAACGCuucGGGGAUggUAGCcgCGccgaaccACCCg -3'
miRNA:   3'- caUUGCGu--UCCCUA--AUUGuaGU-------UGGG- -5'
18429 3' -45 NC_004681.1 + 58688 0.67 0.998948
Target:  5'- -gAugGCGGGGGAcgUGuuccuCGUUGAUCCg -3'
miRNA:   3'- caUugCGUUCCCUa-AUu----GUAGUUGGG- -5'
18429 3' -45 NC_004681.1 + 2764 0.67 0.998948
Target:  5'- aGUGACGCuc-GGA--GACGUaggaGACCCg -3'
miRNA:   3'- -CAUUGCGuucCCUaaUUGUAg---UUGGG- -5'
18429 3' -45 NC_004681.1 + 5121 0.67 0.998699
Target:  5'- -gGAUGCcagugAAGGGGggcACGUCAuGCCCg -3'
miRNA:   3'- caUUGCG-----UUCCCUaauUGUAGU-UGGG- -5'
18429 3' -45 NC_004681.1 + 56215 0.68 0.998401
Target:  5'- -gGugGCcu-GGAccGGCGUCGACCCg -3'
miRNA:   3'- caUugCGuucCCUaaUUGUAGUUGGG- -5'
18429 3' -45 NC_004681.1 + 21466 0.68 0.998401
Target:  5'- --uACGCccccGAGGGugugAACAUCGcCCCg -3'
miRNA:   3'- cauUGCG----UUCCCuaa-UUGUAGUuGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.