miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18429 3' -45 NC_004681.1 + 28459 1.15 0.007488
Target:  5'- uGUAACGCAAGGGAUUAACAUCAACCCg -3'
miRNA:   3'- -CAUUGCGUUCCCUAAUUGUAGUUGGG- -5'
18429 3' -45 NC_004681.1 + 18868 0.79 0.712847
Target:  5'- -cGACGCAu-GGAUUuccuACGUCAGCCCa -3'
miRNA:   3'- caUUGCGUucCCUAAu---UGUAGUUGGG- -5'
18429 3' -45 NC_004681.1 + 65200 0.75 0.896208
Target:  5'- -gGACGCcugguggGAGGGucagGAUAUCGACCCc -3'
miRNA:   3'- caUUGCG-------UUCCCuaa-UUGUAGUUGGG- -5'
18429 3' -45 NC_004681.1 + 26328 0.73 0.951145
Target:  5'- --cGCGUAGGGGGcgGGCAUCGccGCCg -3'
miRNA:   3'- cauUGCGUUCCCUaaUUGUAGU--UGGg -5'
18429 3' -45 NC_004681.1 + 16623 0.73 0.951145
Target:  5'- ---cCGCGAuGGAggcggcgGGCAUCAGCCCg -3'
miRNA:   3'- cauuGCGUUcCCUaa-----UUGUAGUUGGG- -5'
18429 3' -45 NC_004681.1 + 50571 0.72 0.959867
Target:  5'- uUGGCGCAGgacacggucGGGGUgGGCGUC-GCCCa -3'
miRNA:   3'- cAUUGCGUU---------CCCUAaUUGUAGuUGGG- -5'
18429 3' -45 NC_004681.1 + 11362 0.71 0.976835
Target:  5'- uUGACGaggaugaAAGGcGUUGggGCAUCAACCCa -3'
miRNA:   3'- cAUUGCg------UUCCcUAAU--UGUAGUUGGG- -5'
18429 3' -45 NC_004681.1 + 56587 0.71 0.976835
Target:  5'- ---cCGCAAGGuGAUcaagGACGUCAacaACCCc -3'
miRNA:   3'- cauuGCGUUCC-CUAa---UUGUAGU---UGGG- -5'
18429 3' -45 NC_004681.1 + 39283 0.71 0.979469
Target:  5'- -cGACGuCGAGGGcg-AGCAUCuccgcGGCCCg -3'
miRNA:   3'- caUUGC-GUUCCCuaaUUGUAG-----UUGGG- -5'
18429 3' -45 NC_004681.1 + 43463 0.71 0.981874
Target:  5'- --cGCGCcGGGGAUaUGACGUC--CCCg -3'
miRNA:   3'- cauUGCGuUCCCUA-AUUGUAGuuGGG- -5'
18429 3' -45 NC_004681.1 + 29288 0.71 0.984061
Target:  5'- gGUuACGUgaGAGGGAUUGugAUgGccGCCCa -3'
miRNA:   3'- -CAuUGCG--UUCCCUAAUugUAgU--UGGG- -5'
18429 3' -45 NC_004681.1 + 39372 0.7 0.987828
Target:  5'- --cGCGCAcaucGGGGAguacUUGACGcggCGGCCCu -3'
miRNA:   3'- cauUGCGU----UCCCU----AAUUGUa--GUUGGG- -5'
18429 3' -45 NC_004681.1 + 66511 0.7 0.989432
Target:  5'- cUGACGUAAGGGG--AACAugUCAcucaaggaaGCCCu -3'
miRNA:   3'- cAUUGCGUUCCCUaaUUGU--AGU---------UGGG- -5'
18429 3' -45 NC_004681.1 + 51355 0.7 0.992143
Target:  5'- ----aGCAAGGGAUgcugAACAagaUCGgaGCCCc -3'
miRNA:   3'- cauugCGUUCCCUAa---UUGU---AGU--UGGG- -5'
18429 3' -45 NC_004681.1 + 51007 0.7 0.992612
Target:  5'- -cGACGUcGGGGAgcucuuccacaagGGCGUCAucGCCCu -3'
miRNA:   3'- caUUGCGuUCCCUaa-----------UUGUAGU--UGGG- -5'
18429 3' -45 NC_004681.1 + 33592 0.69 0.993688
Target:  5'- -aAGCGCAAGGacaagcgcgacGACAUCAACgCCa -3'
miRNA:   3'- caUUGCGUUCCcuaa-------UUGUAGUUG-GG- -5'
18429 3' -45 NC_004681.1 + 4171 0.69 0.995144
Target:  5'- -cAGCGC--GGGGUUGGCGUgGGgCCa -3'
miRNA:   3'- caUUGCGuuCCCUAAUUGUAgUUgGG- -5'
18429 3' -45 NC_004681.1 + 54515 0.69 0.995907
Target:  5'- -cGACGCAGcucuGGAcgucgcgcUUGACGUCGACCa -3'
miRNA:   3'- caUUGCGUUc---CCU--------AAUUGUAGUUGGg -5'
18429 3' -45 NC_004681.1 + 46408 0.69 0.995907
Target:  5'- -aGugGUAGGGGAUUGgagaGC-UC-ACCCa -3'
miRNA:   3'- caUugCGUUCCCUAAU----UGuAGuUGGG- -5'
18429 3' -45 NC_004681.1 + 7014 0.68 0.997629
Target:  5'- -cGugGaCGAGGGGc--ACAUCAGCaCCg -3'
miRNA:   3'- caUugC-GUUCCCUaauUGUAGUUG-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.