miRNA display CGI


Results 1 - 20 of 47 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18429 3' -45 NC_004681.1 + 2764 0.67 0.998948
Target:  5'- aGUGACGCuc-GGA--GACGUaggaGACCCg -3'
miRNA:   3'- -CAUUGCGuucCCUaaUUGUAg---UUGGG- -5'
18429 3' -45 NC_004681.1 + 3551 0.68 0.998401
Target:  5'- --cACGguGGGGAcgGGCGUC-ACCg -3'
miRNA:   3'- cauUGCguUCCCUaaUUGUAGuUGGg -5'
18429 3' -45 NC_004681.1 + 4171 0.69 0.995144
Target:  5'- -cAGCGC--GGGGUUGGCGUgGGgCCa -3'
miRNA:   3'- caUUGCGuuCCCUAAUUGUAgUUgGG- -5'
18429 3' -45 NC_004681.1 + 5121 0.67 0.998699
Target:  5'- -gGAUGCcagugAAGGGGggcACGUCAuGCCCg -3'
miRNA:   3'- caUUGCG-----UUCCCUaauUGUAGU-UGGG- -5'
18429 3' -45 NC_004681.1 + 7014 0.68 0.997629
Target:  5'- -cGugGaCGAGGGGc--ACAUCAGCaCCg -3'
miRNA:   3'- caUugC-GUUCCCUaauUGUAGUUG-GG- -5'
18429 3' -45 NC_004681.1 + 10392 0.68 0.998008
Target:  5'- --cGCGCGAGGcGAaUGGCGacgucgaUCAGCUCa -3'
miRNA:   3'- cauUGCGUUCC-CUaAUUGU-------AGUUGGG- -5'
18429 3' -45 NC_004681.1 + 11362 0.71 0.976835
Target:  5'- uUGACGaggaugaAAGGcGUUGggGCAUCAACCCa -3'
miRNA:   3'- cAUUGCg------UUCCcUAAU--UGUAGUUGGG- -5'
18429 3' -45 NC_004681.1 + 16623 0.73 0.951145
Target:  5'- ---cCGCGAuGGAggcggcgGGCAUCAGCCCg -3'
miRNA:   3'- cauuGCGUUcCCUaa-----UUGUAGUUGGG- -5'
18429 3' -45 NC_004681.1 + 18868 0.79 0.712847
Target:  5'- -cGACGCAu-GGAUUuccuACGUCAGCCCa -3'
miRNA:   3'- caUUGCGUucCCUAAu---UGUAGUUGGG- -5'
18429 3' -45 NC_004681.1 + 21466 0.68 0.998401
Target:  5'- --uACGCccccGAGGGugugAACAUCGcCCCg -3'
miRNA:   3'- cauUGCG----UUCCCuaa-UUGUAGUuGGG- -5'
18429 3' -45 NC_004681.1 + 22936 0.66 0.999674
Target:  5'- -gAACGC-GGGGAUgagGAuCAUCGgaggcggggucGCCCc -3'
miRNA:   3'- caUUGCGuUCCCUAa--UU-GUAGU-----------UGGG- -5'
18429 3' -45 NC_004681.1 + 24129 0.67 0.999137
Target:  5'- -gAACGCuucGGGGAUggUAGCcgCGccgaaccACCCg -3'
miRNA:   3'- caUUGCGu--UCCCUA--AUUGuaGU-------UGGG- -5'
18429 3' -45 NC_004681.1 + 25670 0.68 0.998401
Target:  5'- gGUAugGCcacAGGGGcggggccaGGCGUCGGCCUg -3'
miRNA:   3'- -CAUugCGu--UCCCUaa------UUGUAGUUGGG- -5'
18429 3' -45 NC_004681.1 + 26328 0.73 0.951145
Target:  5'- --cGCGUAGGGGGcgGGCAUCGccGCCg -3'
miRNA:   3'- cauUGCGUUCCCUaaUUGUAGU--UGGg -5'
18429 3' -45 NC_004681.1 + 28459 1.15 0.007488
Target:  5'- uGUAACGCAAGGGAUUAACAUCAACCCg -3'
miRNA:   3'- -CAUUGCGUUCCCUAAUUGUAGUUGGG- -5'
18429 3' -45 NC_004681.1 + 29288 0.71 0.984061
Target:  5'- gGUuACGUgaGAGGGAUUGugAUgGccGCCCa -3'
miRNA:   3'- -CAuUGCG--UUCCCUAAUugUAgU--UGGG- -5'
18429 3' -45 NC_004681.1 + 32058 0.66 0.999674
Target:  5'- -cAGCGCAAGGaa--GGCGUCcucgagaagcugGACCCg -3'
miRNA:   3'- caUUGCGUUCCcuaaUUGUAG------------UUGGG- -5'
18429 3' -45 NC_004681.1 + 32163 0.68 0.998401
Target:  5'- --cGCGuCAAGGaGGUcgugAACAcgcUCAACCCg -3'
miRNA:   3'- cauUGC-GUUCC-CUAa---UUGU---AGUUGGG- -5'
18429 3' -45 NC_004681.1 + 33592 0.69 0.993688
Target:  5'- -aAGCGCAAGGacaagcgcgacGACAUCAACgCCa -3'
miRNA:   3'- caUUGCGUUCCcuaa-------UUGUAGUUG-GG- -5'
18429 3' -45 NC_004681.1 + 38553 0.68 0.998401
Target:  5'- ---cUGUggGGGAU---CGUCAGCCUg -3'
miRNA:   3'- cauuGCGuuCCCUAauuGUAGUUGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.