miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18429 3' -45 NC_004681.1 + 68734 0.66 0.999582
Target:  5'- aUGAgGCAGGGGA--AGCAcuugguGCCCu -3'
miRNA:   3'- cAUUgCGUUCCCUaaUUGUagu---UGGG- -5'
18429 3' -45 NC_004681.1 + 66969 0.66 0.999582
Target:  5'- -aGGCGaCAucGGGGAcagucACGUCGGCCUg -3'
miRNA:   3'- caUUGC-GU--UCCCUaau--UGUAGUUGGG- -5'
18429 3' -45 NC_004681.1 + 66511 0.7 0.989432
Target:  5'- cUGACGUAAGGGG--AACAugUCAcucaaggaaGCCCu -3'
miRNA:   3'- cAUUGCGUUCCCUaaUUGU--AGU---------UGGG- -5'
18429 3' -45 NC_004681.1 + 65200 0.75 0.896208
Target:  5'- -gGACGCcugguggGAGGGucagGAUAUCGACCCc -3'
miRNA:   3'- caUUGCG-------UUCCCuaa-UUGUAGUUGGG- -5'
18429 3' -45 NC_004681.1 + 64945 0.66 0.999582
Target:  5'- -cGACGCGccuGGAgcugGACGUCuacuACCCg -3'
miRNA:   3'- caUUGCGUuc-CCUaa--UUGUAGu---UGGG- -5'
18429 3' -45 NC_004681.1 + 60186 0.66 0.999748
Target:  5'- -gAGCGCGAGGuGAUcGGCAcCcGCCg -3'
miRNA:   3'- caUUGCGUUCC-CUAaUUGUaGuUGGg -5'
18429 3' -45 NC_004681.1 + 59450 0.66 0.999748
Target:  5'- -aAGgGCAccuGGGGA--GGCGUCAGCUa -3'
miRNA:   3'- caUUgCGU---UCCCUaaUUGUAGUUGGg -5'
18429 3' -45 NC_004681.1 + 58688 0.67 0.998948
Target:  5'- -gAugGCGGGGGAcgUGuuccuCGUUGAUCCg -3'
miRNA:   3'- caUugCGUUCCCUa-AUu----GUAGUUGGG- -5'
18429 3' -45 NC_004681.1 + 58538 0.66 0.999748
Target:  5'- uUGACGUggGcgccGGucUUGGCGUCGGCCg -3'
miRNA:   3'- cAUUGCGuuC----CCu-AAUUGUAGUUGGg -5'
18429 3' -45 NC_004681.1 + 57931 0.67 0.999156
Target:  5'- -aAGCGaGAGGGAggGGC--CAGCCCc -3'
miRNA:   3'- caUUGCgUUCCCUaaUUGuaGUUGGG- -5'
18429 3' -45 NC_004681.1 + 56587 0.71 0.976835
Target:  5'- ---cCGCAAGGuGAUcaagGACGUCAacaACCCc -3'
miRNA:   3'- cauuGCGUUCC-CUAa---UUGUAGU---UGGG- -5'
18429 3' -45 NC_004681.1 + 56215 0.68 0.998401
Target:  5'- -gGugGCcu-GGAccGGCGUCGACCCg -3'
miRNA:   3'- caUugCGuucCCUaaUUGUAGUUGGG- -5'
18429 3' -45 NC_004681.1 + 55946 0.67 0.999327
Target:  5'- -gAACuCAAGGGAUUGGa--CAACCUc -3'
miRNA:   3'- caUUGcGUUCCCUAAUUguaGUUGGG- -5'
18429 3' -45 NC_004681.1 + 54515 0.69 0.995907
Target:  5'- -cGACGCAGcucuGGAcgucgcgcUUGACGUCGACCa -3'
miRNA:   3'- caUUGCGUUc---CCU--------AAUUGUAGUUGGg -5'
18429 3' -45 NC_004681.1 + 51355 0.7 0.992143
Target:  5'- ----aGCAAGGGAUgcugAACAagaUCGgaGCCCc -3'
miRNA:   3'- cauugCGUUCCCUAa---UUGU---AGU--UGGG- -5'
18429 3' -45 NC_004681.1 + 51007 0.7 0.992612
Target:  5'- -cGACGUcGGGGAgcucuuccacaagGGCGUCAucGCCCu -3'
miRNA:   3'- caUUGCGuUCCCUaa-----------UUGUAGU--UGGG- -5'
18429 3' -45 NC_004681.1 + 50571 0.72 0.959867
Target:  5'- uUGGCGCAGgacacggucGGGGUgGGCGUC-GCCCa -3'
miRNA:   3'- cAUUGCGUU---------CCCUAaUUGUAGuUGGG- -5'
18429 3' -45 NC_004681.1 + 49199 0.66 0.999468
Target:  5'- -cGACGCAguugcgugcGGaGGAUgcccGCGUCAggguGCCCg -3'
miRNA:   3'- caUUGCGU---------UC-CCUAau--UGUAGU----UGGG- -5'
18429 3' -45 NC_004681.1 + 46408 0.69 0.995907
Target:  5'- -aGugGUAGGGGAUUGgagaGC-UC-ACCCa -3'
miRNA:   3'- caUugCGUUCCCUAAU----UGuAGuUGGG- -5'
18429 3' -45 NC_004681.1 + 44954 0.66 0.999455
Target:  5'- cGUGACGUAGGGGA---ACAUgGagaagaaGCCg -3'
miRNA:   3'- -CAUUGCGUUCCCUaauUGUAgU-------UGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.