Results 1 - 20 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18429 | 3' | -45 | NC_004681.1 | + | 32058 | 0.66 | 0.999674 |
Target: 5'- -cAGCGCAAGGaa--GGCGUCcucgagaagcugGACCCg -3' miRNA: 3'- caUUGCGUUCCcuaaUUGUAG------------UUGGG- -5' |
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18429 | 3' | -45 | NC_004681.1 | + | 21466 | 0.68 | 0.998401 |
Target: 5'- --uACGCccccGAGGGugugAACAUCGcCCCg -3' miRNA: 3'- cauUGCG----UUCCCuaa-UUGUAGUuGGG- -5' |
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18429 | 3' | -45 | NC_004681.1 | + | 32163 | 0.68 | 0.998401 |
Target: 5'- --cGCGuCAAGGaGGUcgugAACAcgcUCAACCCg -3' miRNA: 3'- cauUGC-GUUCC-CUAa---UUGU---AGUUGGG- -5' |
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18429 | 3' | -45 | NC_004681.1 | + | 56215 | 0.68 | 0.998401 |
Target: 5'- -gGugGCcu-GGAccGGCGUCGACCCg -3' miRNA: 3'- caUugCGuucCCUaaUUGUAGUUGGG- -5' |
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18429 | 3' | -45 | NC_004681.1 | + | 58688 | 0.67 | 0.998948 |
Target: 5'- -gAugGCGGGGGAcgUGuuccuCGUUGAUCCg -3' miRNA: 3'- caUugCGUUCCCUa-AUu----GUAGUUGGG- -5' |
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18429 | 3' | -45 | NC_004681.1 | + | 55946 | 0.67 | 0.999327 |
Target: 5'- -gAACuCAAGGGAUUGGa--CAACCUc -3' miRNA: 3'- caUUGcGUUCCCUAAUUguaGUUGGG- -5' |
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18429 | 3' | -45 | NC_004681.1 | + | 66969 | 0.66 | 0.999582 |
Target: 5'- -aGGCGaCAucGGGGAcagucACGUCGGCCUg -3' miRNA: 3'- caUUGC-GU--UCCCUaau--UGUAGUUGGG- -5' |
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18429 | 3' | -45 | NC_004681.1 | + | 64945 | 0.66 | 0.999582 |
Target: 5'- -cGACGCGccuGGAgcugGACGUCuacuACCCg -3' miRNA: 3'- caUUGCGUuc-CCUaa--UUGUAGu---UGGG- -5' |
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18429 | 3' | -45 | NC_004681.1 | + | 43782 | 0.66 | 0.999666 |
Target: 5'- -cAGgGCAGGGGAUUugccuccuuccacGAgGUCcgcGCCCa -3' miRNA: 3'- caUUgCGUUCCCUAA-------------UUgUAGu--UGGG- -5' |
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18429 | 3' | -45 | NC_004681.1 | + | 25670 | 0.68 | 0.998401 |
Target: 5'- gGUAugGCcacAGGGGcggggccaGGCGUCGGCCUg -3' miRNA: 3'- -CAUugCGu--UCCCUaa------UUGUAGUUGGG- -5' |
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18429 | 3' | -45 | NC_004681.1 | + | 7014 | 0.68 | 0.997629 |
Target: 5'- -cGugGaCGAGGGGc--ACAUCAGCaCCg -3' miRNA: 3'- caUugC-GUUCCCUaauUGUAGUUG-GG- -5' |
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18429 | 3' | -45 | NC_004681.1 | + | 46408 | 0.69 | 0.995907 |
Target: 5'- -aGugGUAGGGGAUUGgagaGC-UC-ACCCa -3' miRNA: 3'- caUugCGUUCCCUAAU----UGuAGuUGGG- -5' |
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18429 | 3' | -45 | NC_004681.1 | + | 18868 | 0.79 | 0.712847 |
Target: 5'- -cGACGCAu-GGAUUuccuACGUCAGCCCa -3' miRNA: 3'- caUUGCGUucCCUAAu---UGUAGUUGGG- -5' |
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18429 | 3' | -45 | NC_004681.1 | + | 65200 | 0.75 | 0.896208 |
Target: 5'- -gGACGCcugguggGAGGGucagGAUAUCGACCCc -3' miRNA: 3'- caUUGCG-------UUCCCuaa-UUGUAGUUGGG- -5' |
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18429 | 3' | -45 | NC_004681.1 | + | 16623 | 0.73 | 0.951145 |
Target: 5'- ---cCGCGAuGGAggcggcgGGCAUCAGCCCg -3' miRNA: 3'- cauuGCGUUcCCUaa-----UUGUAGUUGGG- -5' |
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18429 | 3' | -45 | NC_004681.1 | + | 56587 | 0.71 | 0.976835 |
Target: 5'- ---cCGCAAGGuGAUcaagGACGUCAacaACCCc -3' miRNA: 3'- cauuGCGUUCC-CUAa---UUGUAGU---UGGG- -5' |
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18429 | 3' | -45 | NC_004681.1 | + | 66511 | 0.7 | 0.989432 |
Target: 5'- cUGACGUAAGGGG--AACAugUCAcucaaggaaGCCCu -3' miRNA: 3'- cAUUGCGUUCCCUaaUUGU--AGU---------UGGG- -5' |
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18429 | 3' | -45 | NC_004681.1 | + | 51355 | 0.7 | 0.992143 |
Target: 5'- ----aGCAAGGGAUgcugAACAagaUCGgaGCCCc -3' miRNA: 3'- cauugCGUUCCCUAa---UUGU---AGU--UGGG- -5' |
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18429 | 3' | -45 | NC_004681.1 | + | 51007 | 0.7 | 0.992612 |
Target: 5'- -cGACGUcGGGGAgcucuuccacaagGGCGUCAucGCCCu -3' miRNA: 3'- caUUGCGuUCCCUaa-----------UUGUAGU--UGGG- -5' |
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18429 | 3' | -45 | NC_004681.1 | + | 33592 | 0.69 | 0.993688 |
Target: 5'- -aAGCGCAAGGacaagcgcgacGACAUCAACgCCa -3' miRNA: 3'- caUUGCGUUCCcuaa-------UUGUAGUUG-GG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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