Results 21 - 40 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18429 | 3' | -45 | NC_004681.1 | + | 51007 | 0.7 | 0.992612 |
Target: 5'- -cGACGUcGGGGAgcucuuccacaagGGCGUCAucGCCCu -3' miRNA: 3'- caUUGCGuUCCCUaa-----------UUGUAGU--UGGG- -5' |
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18429 | 3' | -45 | NC_004681.1 | + | 33592 | 0.69 | 0.993688 |
Target: 5'- -aAGCGCAAGGacaagcgcgacGACAUCAACgCCa -3' miRNA: 3'- caUUGCGUUCCcuaa-------UUGUAGUUG-GG- -5' |
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18429 | 3' | -45 | NC_004681.1 | + | 46408 | 0.69 | 0.995907 |
Target: 5'- -aGugGUAGGGGAUUGgagaGC-UC-ACCCa -3' miRNA: 3'- caUugCGUUCCCUAAU----UGuAGuUGGG- -5' |
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18429 | 3' | -45 | NC_004681.1 | + | 7014 | 0.68 | 0.997629 |
Target: 5'- -cGugGaCGAGGGGc--ACAUCAGCaCCg -3' miRNA: 3'- caUugC-GUUCCCUaauUGUAGUUG-GG- -5' |
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18429 | 3' | -45 | NC_004681.1 | + | 39624 | 0.68 | 0.997629 |
Target: 5'- cUGACGCc-GGGAUUGc---CAGCCCg -3' miRNA: 3'- cAUUGCGuuCCCUAAUuguaGUUGGG- -5' |
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18429 | 3' | -45 | NC_004681.1 | + | 10392 | 0.68 | 0.998008 |
Target: 5'- --cGCGCGAGGcGAaUGGCGacgucgaUCAGCUCa -3' miRNA: 3'- cauUGCGUUCC-CUaAUUGU-------AGUUGGG- -5' |
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18429 | 3' | -45 | NC_004681.1 | + | 44844 | 0.68 | 0.998401 |
Target: 5'- ---cCGCGAGGGAguccucGACGUCGaagGCgCCg -3' miRNA: 3'- cauuGCGUUCCCUaa----UUGUAGU---UG-GG- -5' |
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18429 | 3' | -45 | NC_004681.1 | + | 38553 | 0.68 | 0.998401 |
Target: 5'- ---cUGUggGGGAU---CGUCAGCCUg -3' miRNA: 3'- cauuGCGuuCCCUAauuGUAGUUGGG- -5' |
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18429 | 3' | -45 | NC_004681.1 | + | 3551 | 0.68 | 0.998401 |
Target: 5'- --cACGguGGGGAcgGGCGUC-ACCg -3' miRNA: 3'- cauUGCguUCCCUaaUUGUAGuUGGg -5' |
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18429 | 3' | -45 | NC_004681.1 | + | 5121 | 0.67 | 0.998699 |
Target: 5'- -gGAUGCcagugAAGGGGggcACGUCAuGCCCg -3' miRNA: 3'- caUUGCG-----UUCCCUaauUGUAGU-UGGG- -5' |
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18429 | 3' | -45 | NC_004681.1 | + | 2764 | 0.67 | 0.998948 |
Target: 5'- aGUGACGCuc-GGA--GACGUaggaGACCCg -3' miRNA: 3'- -CAUUGCGuucCCUaaUUGUAg---UUGGG- -5' |
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18429 | 3' | -45 | NC_004681.1 | + | 54515 | 0.69 | 0.995907 |
Target: 5'- -cGACGCAGcucuGGAcgucgcgcUUGACGUCGACCa -3' miRNA: 3'- caUUGCGUUc---CCU--------AAUUGUAGUUGGg -5' |
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18429 | 3' | -45 | NC_004681.1 | + | 4171 | 0.69 | 0.995144 |
Target: 5'- -cAGCGC--GGGGUUGGCGUgGGgCCa -3' miRNA: 3'- caUUGCGuuCCCUAAUUGUAgUUgGG- -5' |
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18429 | 3' | -45 | NC_004681.1 | + | 39372 | 0.7 | 0.987828 |
Target: 5'- --cGCGCAcaucGGGGAguacUUGACGcggCGGCCCu -3' miRNA: 3'- cauUGCGU----UCCCU----AAUUGUa--GUUGGG- -5' |
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18429 | 3' | -45 | NC_004681.1 | + | 29288 | 0.71 | 0.984061 |
Target: 5'- gGUuACGUgaGAGGGAUUGugAUgGccGCCCa -3' miRNA: 3'- -CAuUGCG--UUCCCUAAUugUAgU--UGGG- -5' |
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18429 | 3' | -45 | NC_004681.1 | + | 43463 | 0.71 | 0.981874 |
Target: 5'- --cGCGCcGGGGAUaUGACGUC--CCCg -3' miRNA: 3'- cauUGCGuUCCCUA-AUUGUAGuuGGG- -5' |
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18429 | 3' | -45 | NC_004681.1 | + | 39283 | 0.71 | 0.979469 |
Target: 5'- -cGACGuCGAGGGcg-AGCAUCuccgcGGCCCg -3' miRNA: 3'- caUUGC-GUUCCCuaaUUGUAG-----UUGGG- -5' |
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18429 | 3' | -45 | NC_004681.1 | + | 11362 | 0.71 | 0.976835 |
Target: 5'- uUGACGaggaugaAAGGcGUUGggGCAUCAACCCa -3' miRNA: 3'- cAUUGCg------UUCCcUAAU--UGUAGUUGGG- -5' |
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18429 | 3' | -45 | NC_004681.1 | + | 50571 | 0.72 | 0.959867 |
Target: 5'- uUGGCGCAGgacacggucGGGGUgGGCGUC-GCCCa -3' miRNA: 3'- cAUUGCGUU---------CCCUAaUUGUAGuUGGG- -5' |
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18429 | 3' | -45 | NC_004681.1 | + | 58538 | 0.66 | 0.999748 |
Target: 5'- uUGACGUggGcgccGGucUUGGCGUCGGCCg -3' miRNA: 3'- cAUUGCGuuC----CCu-AAUUGUAGUUGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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