miRNA display CGI


Results 1 - 20 of 51 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18429 5' -60.7 NC_004681.1 + 19946 0.66 0.547815
Target:  5'- uUGGGCUCgguguaggacaGCAcCUCGaagCCgGGGuCACCg -3'
miRNA:   3'- gACCCGAG-----------UGU-GAGUg--GGgCCC-GUGG- -5'
18429 5' -60.7 NC_004681.1 + 43808 0.66 0.547815
Target:  5'- -cGaGGUcCGCGCcCACCCCcgcuacGGCACCa -3'
miRNA:   3'- gaC-CCGaGUGUGaGUGGGGc-----CCGUGG- -5'
18429 5' -60.7 NC_004681.1 + 14710 0.66 0.547815
Target:  5'- gUGGG-UUACAC-CGCCUCGGaGUugCa -3'
miRNA:   3'- gACCCgAGUGUGaGUGGGGCC-CGugG- -5'
18429 5' -60.7 NC_004681.1 + 49312 0.66 0.546803
Target:  5'- -cGGGCggucugCACAacCUCACCguCCGccacggcGGCGCCg -3'
miRNA:   3'- gaCCCGa-----GUGU--GAGUGG--GGC-------CCGUGG- -5'
18429 5' -60.7 NC_004681.1 + 12965 0.66 0.546803
Target:  5'- gCUGaccGGCcugacgUCGCGCUCACCggcuacaCCGcuGGCACCg -3'
miRNA:   3'- -GAC---CCG------AGUGUGAGUGG-------GGC--CCGUGG- -5'
18429 5' -60.7 NC_004681.1 + 32665 0.66 0.537725
Target:  5'- cCUGGGCcgACAUgUGgUCCGGGUACCc -3'
miRNA:   3'- -GACCCGagUGUGaGUgGGGCCCGUGG- -5'
18429 5' -60.7 NC_004681.1 + 12578 0.66 0.537725
Target:  5'- -cGGGUcaaACAC-CuuCCCGGGCACg -3'
miRNA:   3'- gaCCCGag-UGUGaGugGGGCCCGUGg -5'
18429 5' -60.7 NC_004681.1 + 25072 0.66 0.527699
Target:  5'- -cGGGCggCACcucGCUCAgCCUccucGGCACCu -3'
miRNA:   3'- gaCCCGa-GUG---UGAGUgGGGc---CCGUGG- -5'
18429 5' -60.7 NC_004681.1 + 17540 0.66 0.517744
Target:  5'- --aGGC-CACGCUC-CCUgGcGGCACCc -3'
miRNA:   3'- gacCCGaGUGUGAGuGGGgC-CCGUGG- -5'
18429 5' -60.7 NC_004681.1 + 16287 0.66 0.517744
Target:  5'- -aGGGCUaccaGCUC-CCCgaGGGCAUCc -3'
miRNA:   3'- gaCCCGAgug-UGAGuGGGg-CCCGUGG- -5'
18429 5' -60.7 NC_004681.1 + 66780 0.66 0.516753
Target:  5'- uCUGGGCcguagauuUC-CAC-CACCCggccccuCGGGUACCc -3'
miRNA:   3'- -GACCCG--------AGuGUGaGUGGG-------GCCCGUGG- -5'
18429 5' -60.7 NC_004681.1 + 51216 0.66 0.507865
Target:  5'- -aGGGCcuUCACuGCuUCACCCCacGGGagGCCg -3'
miRNA:   3'- gaCCCG--AGUG-UG-AGUGGGG--CCCg-UGG- -5'
18429 5' -60.7 NC_004681.1 + 2446 0.66 0.507865
Target:  5'- cCUGGGCcuuguuggCGCGCggCACgCagaaguGGGCGCCg -3'
miRNA:   3'- -GACCCGa-------GUGUGa-GUGgGg-----CCCGUGG- -5'
18429 5' -60.7 NC_004681.1 + 6366 0.67 0.492227
Target:  5'- uUGGGCgccacgcccgauggCGCugUCgagggggaggagGCCCCG-GCGCCg -3'
miRNA:   3'- gACCCGa-------------GUGugAG------------UGGGGCcCGUGG- -5'
18429 5' -60.7 NC_004681.1 + 27539 0.67 0.488353
Target:  5'- gCUGGGCUCGCccaugaUCAUgCCGaGGUcaaACCc -3'
miRNA:   3'- -GACCCGAGUGug----AGUGgGGC-CCG---UGG- -5'
18429 5' -60.7 NC_004681.1 + 12336 0.67 0.488353
Target:  5'- -cGGGC-CACccgACUCAgCCCagaaCGGGcCACCg -3'
miRNA:   3'- gaCCCGaGUG---UGAGU-GGG----GCCC-GUGG- -5'
18429 5' -60.7 NC_004681.1 + 9348 0.67 0.478729
Target:  5'- -gGGGCgUCccgguuguCAC-CACCCCgcugaucccgcuGGGCACCa -3'
miRNA:   3'- gaCCCG-AGu-------GUGaGUGGGG------------CCCGUGG- -5'
18429 5' -60.7 NC_004681.1 + 14573 0.67 0.478729
Target:  5'- --cGGC-CGCAgUCGCCUUcGGCACCg -3'
miRNA:   3'- gacCCGaGUGUgAGUGGGGcCCGUGG- -5'
18429 5' -60.7 NC_004681.1 + 50461 0.67 0.478729
Target:  5'- gUGGGCg-ACGCcCACCCCGaccguguccuGCGCCa -3'
miRNA:   3'- gACCCGagUGUGaGUGGGGCc---------CGUGG- -5'
18429 5' -60.7 NC_004681.1 + 49845 0.67 0.4692
Target:  5'- -aGGGCUUuCACgucCGCCCCuGGCAg- -3'
miRNA:   3'- gaCCCGAGuGUGa--GUGGGGcCCGUgg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.