Results 1 - 20 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
18429 | 5' | -60.7 | NC_004681.1 | + | 28493 | 1.1 | 0.000403 |
Target: 5'- gCUGGGCUCACACUCACCCCGGGCACCc -3' miRNA: 3'- -GACCCGAGUGUGAGUGGGGCCCGUGG- -5' |
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18429 | 5' | -60.7 | NC_004681.1 | + | 22406 | 0.78 | 0.08745 |
Target: 5'- -gGGGCUUACcggGCUCACCCUgcgccaugacgggcaGGGCGCCc -3' miRNA: 3'- gaCCCGAGUG---UGAGUGGGG---------------CCCGUGG- -5' |
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18429 | 5' | -60.7 | NC_004681.1 | + | 18347 | 0.77 | 0.104375 |
Target: 5'- -cGGGCUCGgGUUCACCCCcgguGGCGCCa -3' miRNA: 3'- gaCCCGAGUgUGAGUGGGGc---CCGUGG- -5' |
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18429 | 5' | -60.7 | NC_004681.1 | + | 68506 | 0.75 | 0.143265 |
Target: 5'- aCUGaauGGCUCGCGg-CACgCCUGGGCGCCa -3' miRNA: 3'- -GAC---CCGAGUGUgaGUG-GGGCCCGUGG- -5' |
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18429 | 5' | -60.7 | NC_004681.1 | + | 37329 | 0.75 | 0.147046 |
Target: 5'- --cGGCUCGCACUCuucugGCCCCGGGUg-- -3' miRNA: 3'- gacCCGAGUGUGAG-----UGGGGCCCGugg -5' |
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18429 | 5' | -60.7 | NC_004681.1 | + | 49059 | 0.75 | 0.150917 |
Target: 5'- -gGGGCUCGCaaaGCUCAgCgaagaCGGGCACCc -3' miRNA: 3'- gaCCCGAGUG---UGAGUgGg----GCCCGUGG- -5' |
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18429 | 5' | -60.7 | NC_004681.1 | + | 23459 | 0.73 | 0.185355 |
Target: 5'- -cGGGCaggaggUugAC-CACCUCGGGCGCCu -3' miRNA: 3'- gaCCCGa-----GugUGaGUGGGGCCCGUGG- -5' |
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18429 | 5' | -60.7 | NC_004681.1 | + | 23742 | 0.71 | 0.287275 |
Target: 5'- aUGGGCUCACccgGCUCGCCgucgucggcgaaCGGG-ACCa -3' miRNA: 3'- gACCCGAGUG---UGAGUGGg-----------GCCCgUGG- -5' |
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18429 | 5' | -60.7 | NC_004681.1 | + | 54629 | 0.71 | 0.288639 |
Target: 5'- -aGGGCUCuGCGgUgAUCUCGGGcCACCg -3' miRNA: 3'- gaCCCGAG-UGUgAgUGGGGCCC-GUGG- -5' |
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18429 | 5' | -60.7 | NC_004681.1 | + | 46780 | 0.7 | 0.302558 |
Target: 5'- --cGGCgUCACGgUCAUCCCGcGCGCCg -3' miRNA: 3'- gacCCG-AGUGUgAGUGGGGCcCGUGG- -5' |
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18429 | 5' | -60.7 | NC_004681.1 | + | 60547 | 0.7 | 0.309709 |
Target: 5'- -aGGGUagUCACGCcgcaCGCCUCGGGCcgcugGCCg -3' miRNA: 3'- gaCCCG--AGUGUGa---GUGGGGCCCG-----UGG- -5' |
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18429 | 5' | -60.7 | NC_004681.1 | + | 56884 | 0.69 | 0.343474 |
Target: 5'- gUGGGCgacccgguagacgUACAggugggcCUCGCCCCGcGGCACg -3' miRNA: 3'- gACCCGa------------GUGU-------GAGUGGGGC-CCGUGg -5' |
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18429 | 5' | -60.7 | NC_004681.1 | + | 18049 | 0.69 | 0.350538 |
Target: 5'- -gGGGCccaccggagccgcccUCgGCACUCACCUgCGGGgACCg -3' miRNA: 3'- gaCCCG---------------AG-UGUGAGUGGG-GCCCgUGG- -5' |
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18429 | 5' | -60.7 | NC_004681.1 | + | 44517 | 0.69 | 0.355303 |
Target: 5'- gCUGGGCgCGCGCgucccaCACCCUGuGGCGa- -3' miRNA: 3'- -GACCCGaGUGUGa-----GUGGGGC-CCGUgg -5' |
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18429 | 5' | -60.7 | NC_004681.1 | + | 65892 | 0.69 | 0.371517 |
Target: 5'- aCUGGucCUCGCGCaUgAUCCUGGGCgACCg -3' miRNA: 3'- -GACCc-GAGUGUG-AgUGGGGCCCG-UGG- -5' |
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18429 | 5' | -60.7 | NC_004681.1 | + | 25758 | 0.69 | 0.37981 |
Target: 5'- -cGGGCgugC-CGCUgACCCCGGacauGCACUu -3' miRNA: 3'- gaCCCGa--GuGUGAgUGGGGCC----CGUGG- -5' |
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18429 | 5' | -60.7 | NC_004681.1 | + | 30448 | 0.69 | 0.383162 |
Target: 5'- -cGGGg-CGCuCUCGCCCacgaacguccaccaGGGCACCg -3' miRNA: 3'- gaCCCgaGUGuGAGUGGGg-------------CCCGUGG- -5' |
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18429 | 5' | -60.7 | NC_004681.1 | + | 49977 | 0.69 | 0.383162 |
Target: 5'- -aGGGC-CGCAUcgucaUCACCCUGGagaccaccaucccgcGCGCCg -3' miRNA: 3'- gaCCCGaGUGUG-----AGUGGGGCC---------------CGUGG- -5' |
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18429 | 5' | -60.7 | NC_004681.1 | + | 13559 | 0.68 | 0.384846 |
Target: 5'- aUGGGCgaagagacguacgCGCGCUUcaagGCCgCGGGCgGCCa -3' miRNA: 3'- gACCCGa------------GUGUGAG----UGGgGCCCG-UGG- -5' |
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18429 | 5' | -60.7 | NC_004681.1 | + | 17093 | 0.68 | 0.388227 |
Target: 5'- uCUGGGCUCAgAUggGCCagaagaucgCGGGCGCg -3' miRNA: 3'- -GACCCGAGUgUGagUGGg--------GCCCGUGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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