miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18429 5' -60.7 NC_004681.1 + 32173 0.68 0.396765
Target:  5'- -aGGucGUgaaCACGCUCAaCCCGGGCACg -3'
miRNA:   3'- gaCC--CGa--GUGUGAGUgGGGCCCGUGg -5'
18429 5' -60.7 NC_004681.1 + 16670 0.68 0.396765
Target:  5'- aCUGGuGCUgGCGacggCGCUCCGaGCACCg -3'
miRNA:   3'- -GACC-CGAgUGUga--GUGGGGCcCGUGG- -5'
18429 5' -60.7 NC_004681.1 + 7434 0.68 0.4142
Target:  5'- -cGcGGCggCGgGgUCAgCCCCGGGUGCCg -3'
miRNA:   3'- gaC-CCGa-GUgUgAGU-GGGGCCCGUGG- -5'
18429 5' -60.7 NC_004681.1 + 58632 0.68 0.423092
Target:  5'- cCUGGGCaUgAUugUCGCgCUCGGcCACCa -3'
miRNA:   3'- -GACCCG-AgUGugAGUG-GGGCCcGUGG- -5'
18429 5' -60.7 NC_004681.1 + 66628 0.68 0.423092
Target:  5'- --cGGCUCuauCGCUCuggacggcGCUCUGGGCAUCg -3'
miRNA:   3'- gacCCGAGu--GUGAG--------UGGGGCCCGUGG- -5'
18429 5' -60.7 NC_004681.1 + 48877 0.68 0.432098
Target:  5'- -cGGGCcucUCGCGCcugucUCACgucaCgCGGGCACCg -3'
miRNA:   3'- gaCCCG---AGUGUG-----AGUGg---G-GCCCGUGG- -5'
18429 5' -60.7 NC_004681.1 + 47778 0.67 0.450439
Target:  5'- ---uGC-CGCAUUCACCCgCGaGGCGCCc -3'
miRNA:   3'- gaccCGaGUGUGAGUGGG-GC-CCGUGG- -5'
18429 5' -60.7 NC_004681.1 + 49366 0.67 0.456024
Target:  5'- aCUGGGCgCACACcuucugcgugaagCACCCagaGGuCACCg -3'
miRNA:   3'- -GACCCGaGUGUGa------------GUGGGg--CCcGUGG- -5'
18429 5' -60.7 NC_004681.1 + 17823 0.67 0.459768
Target:  5'- -gGcGGCcgCGCAaggcaccggcCUCACcaaCCCGGGCGCCc -3'
miRNA:   3'- gaC-CCGa-GUGU----------GAGUG---GGGCCCGUGG- -5'
18429 5' -60.7 NC_004681.1 + 1765 0.67 0.459768
Target:  5'- aCUGGGCcuccccggUACAUUCACCCgGGGaggUCa -3'
miRNA:   3'- -GACCCGa-------GUGUGAGUGGGgCCCgu-GG- -5'
18429 5' -60.7 NC_004681.1 + 22248 0.67 0.4692
Target:  5'- -cGGGUguugUCACucucguGCUCACUCCgcguggcggcguGGGCGCCc -3'
miRNA:   3'- gaCCCG----AGUG------UGAGUGGGG------------CCCGUGG- -5'
18429 5' -60.7 NC_004681.1 + 49845 0.67 0.4692
Target:  5'- -aGGGCUUuCACgucCGCCCCuGGCAg- -3'
miRNA:   3'- gaCCCGAGuGUGa--GUGGGGcCCGUgg -5'
18429 5' -60.7 NC_004681.1 + 50461 0.67 0.478729
Target:  5'- gUGGGCg-ACGCcCACCCCGaccguguccuGCGCCa -3'
miRNA:   3'- gACCCGagUGUGaGUGGGGCc---------CGUGG- -5'
18429 5' -60.7 NC_004681.1 + 14573 0.67 0.478729
Target:  5'- --cGGC-CGCAgUCGCCUUcGGCACCg -3'
miRNA:   3'- gacCCGaGUGUgAGUGGGGcCCGUGG- -5'
18429 5' -60.7 NC_004681.1 + 9348 0.67 0.478729
Target:  5'- -gGGGCgUCccgguuguCAC-CACCCCgcugaucccgcuGGGCACCa -3'
miRNA:   3'- gaCCCG-AGu-------GUGaGUGGGG------------CCCGUGG- -5'
18429 5' -60.7 NC_004681.1 + 12336 0.67 0.488353
Target:  5'- -cGGGC-CACccgACUCAgCCCagaaCGGGcCACCg -3'
miRNA:   3'- gaCCCGaGUG---UGAGU-GGG----GCCC-GUGG- -5'
18429 5' -60.7 NC_004681.1 + 27539 0.67 0.488353
Target:  5'- gCUGGGCUCGCccaugaUCAUgCCGaGGUcaaACCc -3'
miRNA:   3'- -GACCCGAGUGug----AGUGgGGC-CCG---UGG- -5'
18429 5' -60.7 NC_004681.1 + 6366 0.67 0.492227
Target:  5'- uUGGGCgccacgcccgauggCGCugUCgagggggaggagGCCCCG-GCGCCg -3'
miRNA:   3'- gACCCGa-------------GUGugAG------------UGGGGCcCGUGG- -5'
18429 5' -60.7 NC_004681.1 + 2446 0.66 0.507865
Target:  5'- cCUGGGCcuuguuggCGCGCggCACgCagaaguGGGCGCCg -3'
miRNA:   3'- -GACCCGa-------GUGUGa-GUGgGg-----CCCGUGG- -5'
18429 5' -60.7 NC_004681.1 + 51216 0.66 0.507865
Target:  5'- -aGGGCcuUCACuGCuUCACCCCacGGGagGCCg -3'
miRNA:   3'- gaCCCG--AGUG-UG-AGUGGGG--CCCg-UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.