Results 21 - 40 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18429 | 5' | -60.7 | NC_004681.1 | + | 49845 | 0.67 | 0.4692 |
Target: 5'- -aGGGCUUuCACgucCGCCCCuGGCAg- -3' miRNA: 3'- gaCCCGAGuGUGa--GUGGGGcCCGUgg -5' |
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18429 | 5' | -60.7 | NC_004681.1 | + | 17823 | 0.67 | 0.459768 |
Target: 5'- -gGcGGCcgCGCAaggcaccggcCUCACcaaCCCGGGCGCCc -3' miRNA: 3'- gaC-CCGa-GUGU----------GAGUG---GGGCCCGUGG- -5' |
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18429 | 5' | -60.7 | NC_004681.1 | + | 1765 | 0.67 | 0.459768 |
Target: 5'- aCUGGGCcuccccggUACAUUCACCCgGGGaggUCa -3' miRNA: 3'- -GACCCGa-------GUGUGAGUGGGgCCCgu-GG- -5' |
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18429 | 5' | -60.7 | NC_004681.1 | + | 49366 | 0.67 | 0.456024 |
Target: 5'- aCUGGGCgCACACcuucugcgugaagCACCCagaGGuCACCg -3' miRNA: 3'- -GACCCGaGUGUGa------------GUGGGg--CCcGUGG- -5' |
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18429 | 5' | -60.7 | NC_004681.1 | + | 47778 | 0.67 | 0.450439 |
Target: 5'- ---uGC-CGCAUUCACCCgCGaGGCGCCc -3' miRNA: 3'- gaccCGaGUGUGAGUGGG-GC-CCGUGG- -5' |
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18429 | 5' | -60.7 | NC_004681.1 | + | 48877 | 0.68 | 0.432098 |
Target: 5'- -cGGGCcucUCGCGCcugucUCACgucaCgCGGGCACCg -3' miRNA: 3'- gaCCCG---AGUGUG-----AGUGg---G-GCCCGUGG- -5' |
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18429 | 5' | -60.7 | NC_004681.1 | + | 66628 | 0.68 | 0.423092 |
Target: 5'- --cGGCUCuauCGCUCuggacggcGCUCUGGGCAUCg -3' miRNA: 3'- gacCCGAGu--GUGAG--------UGGGGCCCGUGG- -5' |
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18429 | 5' | -60.7 | NC_004681.1 | + | 58632 | 0.68 | 0.423092 |
Target: 5'- cCUGGGCaUgAUugUCGCgCUCGGcCACCa -3' miRNA: 3'- -GACCCG-AgUGugAGUG-GGGCCcGUGG- -5' |
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18429 | 5' | -60.7 | NC_004681.1 | + | 7434 | 0.68 | 0.4142 |
Target: 5'- -cGcGGCggCGgGgUCAgCCCCGGGUGCCg -3' miRNA: 3'- gaC-CCGa-GUgUgAGU-GGGGCCCGUGG- -5' |
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18429 | 5' | -60.7 | NC_004681.1 | + | 32173 | 0.68 | 0.396765 |
Target: 5'- -aGGucGUgaaCACGCUCAaCCCGGGCACg -3' miRNA: 3'- gaCC--CGa--GUGUGAGUgGGGCCCGUGg -5' |
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18429 | 5' | -60.7 | NC_004681.1 | + | 16670 | 0.68 | 0.396765 |
Target: 5'- aCUGGuGCUgGCGacggCGCUCCGaGCACCg -3' miRNA: 3'- -GACC-CGAgUGUga--GUGGGGCcCGUGG- -5' |
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18429 | 5' | -60.7 | NC_004681.1 | + | 17093 | 0.68 | 0.388227 |
Target: 5'- uCUGGGCUCAgAUggGCCagaagaucgCGGGCGCg -3' miRNA: 3'- -GACCCGAGUgUGagUGGg--------GCCCGUGg -5' |
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18429 | 5' | -60.7 | NC_004681.1 | + | 13559 | 0.68 | 0.384846 |
Target: 5'- aUGGGCgaagagacguacgCGCGCUUcaagGCCgCGGGCgGCCa -3' miRNA: 3'- gACCCGa------------GUGUGAG----UGGgGCCCG-UGG- -5' |
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18429 | 5' | -60.7 | NC_004681.1 | + | 49977 | 0.69 | 0.383162 |
Target: 5'- -aGGGC-CGCAUcgucaUCACCCUGGagaccaccaucccgcGCGCCg -3' miRNA: 3'- gaCCCGaGUGUG-----AGUGGGGCC---------------CGUGG- -5' |
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18429 | 5' | -60.7 | NC_004681.1 | + | 30448 | 0.69 | 0.383162 |
Target: 5'- -cGGGg-CGCuCUCGCCCacgaacguccaccaGGGCACCg -3' miRNA: 3'- gaCCCgaGUGuGAGUGGGg-------------CCCGUGG- -5' |
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18429 | 5' | -60.7 | NC_004681.1 | + | 25758 | 0.69 | 0.37981 |
Target: 5'- -cGGGCgugC-CGCUgACCCCGGacauGCACUu -3' miRNA: 3'- gaCCCGa--GuGUGAgUGGGGCC----CGUGG- -5' |
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18429 | 5' | -60.7 | NC_004681.1 | + | 65892 | 0.69 | 0.371517 |
Target: 5'- aCUGGucCUCGCGCaUgAUCCUGGGCgACCg -3' miRNA: 3'- -GACCc-GAGUGUG-AgUGGGGCCCG-UGG- -5' |
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18429 | 5' | -60.7 | NC_004681.1 | + | 44517 | 0.69 | 0.355303 |
Target: 5'- gCUGGGCgCGCGCgucccaCACCCUGuGGCGa- -3' miRNA: 3'- -GACCCGaGUGUGa-----GUGGGGC-CCGUgg -5' |
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18429 | 5' | -60.7 | NC_004681.1 | + | 18049 | 0.69 | 0.350538 |
Target: 5'- -gGGGCccaccggagccgcccUCgGCACUCACCUgCGGGgACCg -3' miRNA: 3'- gaCCCG---------------AG-UGUGAGUGGG-GCCCgUGG- -5' |
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18429 | 5' | -60.7 | NC_004681.1 | + | 56884 | 0.69 | 0.343474 |
Target: 5'- gUGGGCgacccgguagacgUACAggugggcCUCGCCCCGcGGCACg -3' miRNA: 3'- gACCCGa------------GUGU-------GAGUGGGGC-CCGUGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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