miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18429 5' -60.7 NC_004681.1 + 1765 0.67 0.459768
Target:  5'- aCUGGGCcuccccggUACAUUCACCCgGGGaggUCa -3'
miRNA:   3'- -GACCCGa-------GUGUGAGUGGGgCCCgu-GG- -5'
18429 5' -60.7 NC_004681.1 + 2446 0.66 0.507865
Target:  5'- cCUGGGCcuuguuggCGCGCggCACgCagaaguGGGCGCCg -3'
miRNA:   3'- -GACCCGa-------GUGUGa-GUGgGg-----CCCGUGG- -5'
18429 5' -60.7 NC_004681.1 + 6366 0.67 0.492227
Target:  5'- uUGGGCgccacgcccgauggCGCugUCgagggggaggagGCCCCG-GCGCCg -3'
miRNA:   3'- gACCCGa-------------GUGugAG------------UGGGGCcCGUGG- -5'
18429 5' -60.7 NC_004681.1 + 7434 0.68 0.4142
Target:  5'- -cGcGGCggCGgGgUCAgCCCCGGGUGCCg -3'
miRNA:   3'- gaC-CCGa-GUgUgAGU-GGGGCCCGUGG- -5'
18429 5' -60.7 NC_004681.1 + 9348 0.67 0.478729
Target:  5'- -gGGGCgUCccgguuguCAC-CACCCCgcugaucccgcuGGGCACCa -3'
miRNA:   3'- gaCCCG-AGu-------GUGaGUGGGG------------CCCGUGG- -5'
18429 5' -60.7 NC_004681.1 + 12336 0.67 0.488353
Target:  5'- -cGGGC-CACccgACUCAgCCCagaaCGGGcCACCg -3'
miRNA:   3'- gaCCCGaGUG---UGAGU-GGG----GCCC-GUGG- -5'
18429 5' -60.7 NC_004681.1 + 12578 0.66 0.537725
Target:  5'- -cGGGUcaaACAC-CuuCCCGGGCACg -3'
miRNA:   3'- gaCCCGag-UGUGaGugGGGCCCGUGg -5'
18429 5' -60.7 NC_004681.1 + 12965 0.66 0.546803
Target:  5'- gCUGaccGGCcugacgUCGCGCUCACCggcuacaCCGcuGGCACCg -3'
miRNA:   3'- -GAC---CCG------AGUGUGAGUGG-------GGC--CCGUGG- -5'
18429 5' -60.7 NC_004681.1 + 13559 0.68 0.384846
Target:  5'- aUGGGCgaagagacguacgCGCGCUUcaagGCCgCGGGCgGCCa -3'
miRNA:   3'- gACCCGa------------GUGUGAG----UGGgGCCCG-UGG- -5'
18429 5' -60.7 NC_004681.1 + 14573 0.67 0.478729
Target:  5'- --cGGC-CGCAgUCGCCUUcGGCACCg -3'
miRNA:   3'- gacCCGaGUGUgAGUGGGGcCCGUGG- -5'
18429 5' -60.7 NC_004681.1 + 14710 0.66 0.547815
Target:  5'- gUGGG-UUACAC-CGCCUCGGaGUugCa -3'
miRNA:   3'- gACCCgAGUGUGaGUGGGGCC-CGugG- -5'
18429 5' -60.7 NC_004681.1 + 16287 0.66 0.517744
Target:  5'- -aGGGCUaccaGCUC-CCCgaGGGCAUCc -3'
miRNA:   3'- gaCCCGAgug-UGAGuGGGg-CCCGUGG- -5'
18429 5' -60.7 NC_004681.1 + 16670 0.68 0.396765
Target:  5'- aCUGGuGCUgGCGacggCGCUCCGaGCACCg -3'
miRNA:   3'- -GACC-CGAgUGUga--GUGGGGCcCGUGG- -5'
18429 5' -60.7 NC_004681.1 + 17093 0.68 0.388227
Target:  5'- uCUGGGCUCAgAUggGCCagaagaucgCGGGCGCg -3'
miRNA:   3'- -GACCCGAGUgUGagUGGg--------GCCCGUGg -5'
18429 5' -60.7 NC_004681.1 + 17540 0.66 0.517744
Target:  5'- --aGGC-CACGCUC-CCUgGcGGCACCc -3'
miRNA:   3'- gacCCGaGUGUGAGuGGGgC-CCGUGG- -5'
18429 5' -60.7 NC_004681.1 + 17823 0.67 0.459768
Target:  5'- -gGcGGCcgCGCAaggcaccggcCUCACcaaCCCGGGCGCCc -3'
miRNA:   3'- gaC-CCGa-GUGU----------GAGUG---GGGCCCGUGG- -5'
18429 5' -60.7 NC_004681.1 + 18049 0.69 0.350538
Target:  5'- -gGGGCccaccggagccgcccUCgGCACUCACCUgCGGGgACCg -3'
miRNA:   3'- gaCCCG---------------AG-UGUGAGUGGG-GCCCgUGG- -5'
18429 5' -60.7 NC_004681.1 + 18347 0.77 0.104375
Target:  5'- -cGGGCUCGgGUUCACCCCcgguGGCGCCa -3'
miRNA:   3'- gaCCCGAGUgUGAGUGGGGc---CCGUGG- -5'
18429 5' -60.7 NC_004681.1 + 19946 0.66 0.547815
Target:  5'- uUGGGCUCgguguaggacaGCAcCUCGaagCCgGGGuCACCg -3'
miRNA:   3'- gACCCGAG-----------UGU-GAGUg--GGgCCC-GUGG- -5'
18429 5' -60.7 NC_004681.1 + 22248 0.67 0.4692
Target:  5'- -cGGGUguugUCACucucguGCUCACUCCgcguggcggcguGGGCGCCc -3'
miRNA:   3'- gaCCCG----AGUG------UGAGUGGGG------------CCCGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.