miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18429 5' -60.7 NC_004681.1 + 22406 0.78 0.08745
Target:  5'- -gGGGCUUACcggGCUCACCCUgcgccaugacgggcaGGGCGCCc -3'
miRNA:   3'- gaCCCGAGUG---UGAGUGGGG---------------CCCGUGG- -5'
18429 5' -60.7 NC_004681.1 + 23459 0.73 0.185355
Target:  5'- -cGGGCaggaggUugAC-CACCUCGGGCGCCu -3'
miRNA:   3'- gaCCCGa-----GugUGaGUGGGGCCCGUGG- -5'
18429 5' -60.7 NC_004681.1 + 23742 0.71 0.287275
Target:  5'- aUGGGCUCACccgGCUCGCCgucgucggcgaaCGGG-ACCa -3'
miRNA:   3'- gACCCGAGUG---UGAGUGGg-----------GCCCgUGG- -5'
18429 5' -60.7 NC_004681.1 + 25072 0.66 0.527699
Target:  5'- -cGGGCggCACcucGCUCAgCCUccucGGCACCu -3'
miRNA:   3'- gaCCCGa-GUG---UGAGUgGGGc---CCGUGG- -5'
18429 5' -60.7 NC_004681.1 + 25758 0.69 0.37981
Target:  5'- -cGGGCgugC-CGCUgACCCCGGacauGCACUu -3'
miRNA:   3'- gaCCCGa--GuGUGAgUGGGGCC----CGUGG- -5'
18429 5' -60.7 NC_004681.1 + 27539 0.67 0.488353
Target:  5'- gCUGGGCUCGCccaugaUCAUgCCGaGGUcaaACCc -3'
miRNA:   3'- -GACCCGAGUGug----AGUGgGGC-CCG---UGG- -5'
18429 5' -60.7 NC_004681.1 + 28493 1.1 0.000403
Target:  5'- gCUGGGCUCACACUCACCCCGGGCACCc -3'
miRNA:   3'- -GACCCGAGUGUGAGUGGGGCCCGUGG- -5'
18429 5' -60.7 NC_004681.1 + 30448 0.69 0.383162
Target:  5'- -cGGGg-CGCuCUCGCCCacgaacguccaccaGGGCACCg -3'
miRNA:   3'- gaCCCgaGUGuGAGUGGGg-------------CCCGUGG- -5'
18429 5' -60.7 NC_004681.1 + 32173 0.68 0.396765
Target:  5'- -aGGucGUgaaCACGCUCAaCCCGGGCACg -3'
miRNA:   3'- gaCC--CGa--GUGUGAGUgGGGCCCGUGg -5'
18429 5' -60.7 NC_004681.1 + 32665 0.66 0.537725
Target:  5'- cCUGGGCcgACAUgUGgUCCGGGUACCc -3'
miRNA:   3'- -GACCCGagUGUGaGUgGGGCCCGUGG- -5'
18429 5' -60.7 NC_004681.1 + 37329 0.75 0.147046
Target:  5'- --cGGCUCGCACUCuucugGCCCCGGGUg-- -3'
miRNA:   3'- gacCCGAGUGUGAG-----UGGGGCCCGugg -5'
18429 5' -60.7 NC_004681.1 + 43808 0.66 0.547815
Target:  5'- -cGaGGUcCGCGCcCACCCCcgcuacGGCACCa -3'
miRNA:   3'- gaC-CCGaGUGUGaGUGGGGc-----CCGUGG- -5'
18429 5' -60.7 NC_004681.1 + 44517 0.69 0.355303
Target:  5'- gCUGGGCgCGCGCgucccaCACCCUGuGGCGa- -3'
miRNA:   3'- -GACCCGaGUGUGa-----GUGGGGC-CCGUgg -5'
18429 5' -60.7 NC_004681.1 + 46780 0.7 0.302558
Target:  5'- --cGGCgUCACGgUCAUCCCGcGCGCCg -3'
miRNA:   3'- gacCCG-AGUGUgAGUGGGGCcCGUGG- -5'
18429 5' -60.7 NC_004681.1 + 47778 0.67 0.450439
Target:  5'- ---uGC-CGCAUUCACCCgCGaGGCGCCc -3'
miRNA:   3'- gaccCGaGUGUGAGUGGG-GC-CCGUGG- -5'
18429 5' -60.7 NC_004681.1 + 48877 0.68 0.432098
Target:  5'- -cGGGCcucUCGCGCcugucUCACgucaCgCGGGCACCg -3'
miRNA:   3'- gaCCCG---AGUGUG-----AGUGg---G-GCCCGUGG- -5'
18429 5' -60.7 NC_004681.1 + 49059 0.75 0.150917
Target:  5'- -gGGGCUCGCaaaGCUCAgCgaagaCGGGCACCc -3'
miRNA:   3'- gaCCCGAGUG---UGAGUgGg----GCCCGUGG- -5'
18429 5' -60.7 NC_004681.1 + 49312 0.66 0.546803
Target:  5'- -cGGGCggucugCACAacCUCACCguCCGccacggcGGCGCCg -3'
miRNA:   3'- gaCCCGa-----GUGU--GAGUGG--GGC-------CCGUGG- -5'
18429 5' -60.7 NC_004681.1 + 49366 0.67 0.456024
Target:  5'- aCUGGGCgCACACcuucugcgugaagCACCCagaGGuCACCg -3'
miRNA:   3'- -GACCCGaGUGUGa------------GUGGGg--CCcGUGG- -5'
18429 5' -60.7 NC_004681.1 + 49845 0.67 0.4692
Target:  5'- -aGGGCUUuCACgucCGCCCCuGGCAg- -3'
miRNA:   3'- gaCCCGAGuGUGa--GUGGGGcCCGUgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.