Results 1 - 20 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18429 | 5' | -60.7 | NC_004681.1 | + | 68506 | 0.75 | 0.143265 |
Target: 5'- aCUGaauGGCUCGCGg-CACgCCUGGGCGCCa -3' miRNA: 3'- -GAC---CCGAGUGUgaGUG-GGGCCCGUGG- -5' |
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18429 | 5' | -60.7 | NC_004681.1 | + | 66780 | 0.66 | 0.516753 |
Target: 5'- uCUGGGCcguagauuUC-CAC-CACCCggccccuCGGGUACCc -3' miRNA: 3'- -GACCCG--------AGuGUGaGUGGG-------GCCCGUGG- -5' |
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18429 | 5' | -60.7 | NC_004681.1 | + | 66628 | 0.68 | 0.423092 |
Target: 5'- --cGGCUCuauCGCUCuggacggcGCUCUGGGCAUCg -3' miRNA: 3'- gacCCGAGu--GUGAG--------UGGGGCCCGUGG- -5' |
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18429 | 5' | -60.7 | NC_004681.1 | + | 65892 | 0.69 | 0.371517 |
Target: 5'- aCUGGucCUCGCGCaUgAUCCUGGGCgACCg -3' miRNA: 3'- -GACCc-GAGUGUG-AgUGGGGCCCG-UGG- -5' |
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18429 | 5' | -60.7 | NC_004681.1 | + | 60547 | 0.7 | 0.309709 |
Target: 5'- -aGGGUagUCACGCcgcaCGCCUCGGGCcgcugGCCg -3' miRNA: 3'- gaCCCG--AGUGUGa---GUGGGGCCCG-----UGG- -5' |
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18429 | 5' | -60.7 | NC_004681.1 | + | 58632 | 0.68 | 0.423092 |
Target: 5'- cCUGGGCaUgAUugUCGCgCUCGGcCACCa -3' miRNA: 3'- -GACCCG-AgUGugAGUG-GGGCCcGUGG- -5' |
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18429 | 5' | -60.7 | NC_004681.1 | + | 56884 | 0.69 | 0.343474 |
Target: 5'- gUGGGCgacccgguagacgUACAggugggcCUCGCCCCGcGGCACg -3' miRNA: 3'- gACCCGa------------GUGU-------GAGUGGGGC-CCGUGg -5' |
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18429 | 5' | -60.7 | NC_004681.1 | + | 54629 | 0.71 | 0.288639 |
Target: 5'- -aGGGCUCuGCGgUgAUCUCGGGcCACCg -3' miRNA: 3'- gaCCCGAG-UGUgAgUGGGGCCC-GUGG- -5' |
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18429 | 5' | -60.7 | NC_004681.1 | + | 51216 | 0.66 | 0.507865 |
Target: 5'- -aGGGCcuUCACuGCuUCACCCCacGGGagGCCg -3' miRNA: 3'- gaCCCG--AGUG-UG-AGUGGGG--CCCg-UGG- -5' |
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18429 | 5' | -60.7 | NC_004681.1 | + | 50461 | 0.67 | 0.478729 |
Target: 5'- gUGGGCg-ACGCcCACCCCGaccguguccuGCGCCa -3' miRNA: 3'- gACCCGagUGUGaGUGGGGCc---------CGUGG- -5' |
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18429 | 5' | -60.7 | NC_004681.1 | + | 49977 | 0.69 | 0.383162 |
Target: 5'- -aGGGC-CGCAUcgucaUCACCCUGGagaccaccaucccgcGCGCCg -3' miRNA: 3'- gaCCCGaGUGUG-----AGUGGGGCC---------------CGUGG- -5' |
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18429 | 5' | -60.7 | NC_004681.1 | + | 49845 | 0.67 | 0.4692 |
Target: 5'- -aGGGCUUuCACgucCGCCCCuGGCAg- -3' miRNA: 3'- gaCCCGAGuGUGa--GUGGGGcCCGUgg -5' |
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18429 | 5' | -60.7 | NC_004681.1 | + | 49366 | 0.67 | 0.456024 |
Target: 5'- aCUGGGCgCACACcuucugcgugaagCACCCagaGGuCACCg -3' miRNA: 3'- -GACCCGaGUGUGa------------GUGGGg--CCcGUGG- -5' |
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18429 | 5' | -60.7 | NC_004681.1 | + | 49312 | 0.66 | 0.546803 |
Target: 5'- -cGGGCggucugCACAacCUCACCguCCGccacggcGGCGCCg -3' miRNA: 3'- gaCCCGa-----GUGU--GAGUGG--GGC-------CCGUGG- -5' |
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18429 | 5' | -60.7 | NC_004681.1 | + | 49059 | 0.75 | 0.150917 |
Target: 5'- -gGGGCUCGCaaaGCUCAgCgaagaCGGGCACCc -3' miRNA: 3'- gaCCCGAGUG---UGAGUgGg----GCCCGUGG- -5' |
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18429 | 5' | -60.7 | NC_004681.1 | + | 48877 | 0.68 | 0.432098 |
Target: 5'- -cGGGCcucUCGCGCcugucUCACgucaCgCGGGCACCg -3' miRNA: 3'- gaCCCG---AGUGUG-----AGUGg---G-GCCCGUGG- -5' |
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18429 | 5' | -60.7 | NC_004681.1 | + | 47778 | 0.67 | 0.450439 |
Target: 5'- ---uGC-CGCAUUCACCCgCGaGGCGCCc -3' miRNA: 3'- gaccCGaGUGUGAGUGGG-GC-CCGUGG- -5' |
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18429 | 5' | -60.7 | NC_004681.1 | + | 46780 | 0.7 | 0.302558 |
Target: 5'- --cGGCgUCACGgUCAUCCCGcGCGCCg -3' miRNA: 3'- gacCCG-AGUGUgAGUGGGGCcCGUGG- -5' |
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18429 | 5' | -60.7 | NC_004681.1 | + | 44517 | 0.69 | 0.355303 |
Target: 5'- gCUGGGCgCGCGCgucccaCACCCUGuGGCGa- -3' miRNA: 3'- -GACCCGaGUGUGa-----GUGGGGC-CCGUgg -5' |
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18429 | 5' | -60.7 | NC_004681.1 | + | 43808 | 0.66 | 0.547815 |
Target: 5'- -cGaGGUcCGCGCcCACCCCcgcuacGGCACCa -3' miRNA: 3'- gaC-CCGaGUGUGaGUGGGGc-----CCGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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