miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18429 5' -60.7 NC_004681.1 + 22248 0.67 0.4692
Target:  5'- -cGGGUguugUCACucucguGCUCACUCCgcguggcggcguGGGCGCCc -3'
miRNA:   3'- gaCCCG----AGUG------UGAGUGGGG------------CCCGUGG- -5'
18429 5' -60.7 NC_004681.1 + 32173 0.68 0.396765
Target:  5'- -aGGucGUgaaCACGCUCAaCCCGGGCACg -3'
miRNA:   3'- gaCC--CGa--GUGUGAGUgGGGCCCGUGg -5'
18429 5' -60.7 NC_004681.1 + 16670 0.68 0.396765
Target:  5'- aCUGGuGCUgGCGacggCGCUCCGaGCACCg -3'
miRNA:   3'- -GACC-CGAgUGUga--GUGGGGCcCGUGG- -5'
18429 5' -60.7 NC_004681.1 + 66628 0.68 0.423092
Target:  5'- --cGGCUCuauCGCUCuggacggcGCUCUGGGCAUCg -3'
miRNA:   3'- gacCCGAGu--GUGAG--------UGGGGCCCGUGG- -5'
18429 5' -60.7 NC_004681.1 + 48877 0.68 0.432098
Target:  5'- -cGGGCcucUCGCGCcugucUCACgucaCgCGGGCACCg -3'
miRNA:   3'- gaCCCG---AGUGUG-----AGUGg---G-GCCCGUGG- -5'
18429 5' -60.7 NC_004681.1 + 47778 0.67 0.450439
Target:  5'- ---uGC-CGCAUUCACCCgCGaGGCGCCc -3'
miRNA:   3'- gaccCGaGUGUGAGUGGG-GC-CCGUGG- -5'
18429 5' -60.7 NC_004681.1 + 49366 0.67 0.456024
Target:  5'- aCUGGGCgCACACcuucugcgugaagCACCCagaGGuCACCg -3'
miRNA:   3'- -GACCCGaGUGUGa------------GUGGGg--CCcGUGG- -5'
18429 5' -60.7 NC_004681.1 + 17823 0.67 0.459768
Target:  5'- -gGcGGCcgCGCAaggcaccggcCUCACcaaCCCGGGCGCCc -3'
miRNA:   3'- gaC-CCGa-GUGU----------GAGUG---GGGCCCGUGG- -5'
18429 5' -60.7 NC_004681.1 + 49845 0.67 0.4692
Target:  5'- -aGGGCUUuCACgucCGCCCCuGGCAg- -3'
miRNA:   3'- gaCCCGAGuGUGa--GUGGGGcCCGUgg -5'
18429 5' -60.7 NC_004681.1 + 17093 0.68 0.388227
Target:  5'- uCUGGGCUCAgAUggGCCagaagaucgCGGGCGCg -3'
miRNA:   3'- -GACCCGAGUgUGagUGGg--------GCCCGUGg -5'
18429 5' -60.7 NC_004681.1 + 13559 0.68 0.384846
Target:  5'- aUGGGCgaagagacguacgCGCGCUUcaagGCCgCGGGCgGCCa -3'
miRNA:   3'- gACCCGa------------GUGUGAG----UGGgGCCCG-UGG- -5'
18429 5' -60.7 NC_004681.1 + 30448 0.69 0.383162
Target:  5'- -cGGGg-CGCuCUCGCCCacgaacguccaccaGGGCACCg -3'
miRNA:   3'- gaCCCgaGUGuGAGUGGGg-------------CCCGUGG- -5'
18429 5' -60.7 NC_004681.1 + 18347 0.77 0.104375
Target:  5'- -cGGGCUCGgGUUCACCCCcgguGGCGCCa -3'
miRNA:   3'- gaCCCGAGUgUGAGUGGGGc---CCGUGG- -5'
18429 5' -60.7 NC_004681.1 + 68506 0.75 0.143265
Target:  5'- aCUGaauGGCUCGCGg-CACgCCUGGGCGCCa -3'
miRNA:   3'- -GAC---CCGAGUGUgaGUG-GGGCCCGUGG- -5'
18429 5' -60.7 NC_004681.1 + 49059 0.75 0.150917
Target:  5'- -gGGGCUCGCaaaGCUCAgCgaagaCGGGCACCc -3'
miRNA:   3'- gaCCCGAGUG---UGAGUgGg----GCCCGUGG- -5'
18429 5' -60.7 NC_004681.1 + 46780 0.7 0.302558
Target:  5'- --cGGCgUCACGgUCAUCCCGcGCGCCg -3'
miRNA:   3'- gacCCG-AGUGUgAGUGGGGCcCGUGG- -5'
18429 5' -60.7 NC_004681.1 + 60547 0.7 0.309709
Target:  5'- -aGGGUagUCACGCcgcaCGCCUCGGGCcgcugGCCg -3'
miRNA:   3'- gaCCCG--AGUGUGa---GUGGGGCCCG-----UGG- -5'
18429 5' -60.7 NC_004681.1 + 65892 0.69 0.371517
Target:  5'- aCUGGucCUCGCGCaUgAUCCUGGGCgACCg -3'
miRNA:   3'- -GACCc-GAGUGUG-AgUGGGGCCCG-UGG- -5'
18429 5' -60.7 NC_004681.1 + 25758 0.69 0.37981
Target:  5'- -cGGGCgugC-CGCUgACCCCGGacauGCACUu -3'
miRNA:   3'- gaCCCGa--GuGUGAgUGGGGCC----CGUGG- -5'
18429 5' -60.7 NC_004681.1 + 49977 0.69 0.383162
Target:  5'- -aGGGC-CGCAUcgucaUCACCCUGGagaccaccaucccgcGCGCCg -3'
miRNA:   3'- gaCCCGaGUGUG-----AGUGGGGCC---------------CGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.