miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18429 5' -60.7 NC_004681.1 + 22406 0.78 0.08745
Target:  5'- -gGGGCUUACcggGCUCACCCUgcgccaugacgggcaGGGCGCCc -3'
miRNA:   3'- gaCCCGAGUG---UGAGUGGGG---------------CCCGUGG- -5'
18429 5' -60.7 NC_004681.1 + 27539 0.67 0.488353
Target:  5'- gCUGGGCUCGCccaugaUCAUgCCGaGGUcaaACCc -3'
miRNA:   3'- -GACCCGAGUGug----AGUGgGGC-CCG---UGG- -5'
18429 5' -60.7 NC_004681.1 + 7434 0.68 0.4142
Target:  5'- -cGcGGCggCGgGgUCAgCCCCGGGUGCCg -3'
miRNA:   3'- gaC-CCGa-GUgUgAGU-GGGGCCCGUGG- -5'
18429 5' -60.7 NC_004681.1 + 44517 0.69 0.355303
Target:  5'- gCUGGGCgCGCGCgucccaCACCCUGuGGCGa- -3'
miRNA:   3'- -GACCCGaGUGUGa-----GUGGGGC-CCGUgg -5'
18429 5' -60.7 NC_004681.1 + 56884 0.69 0.343474
Target:  5'- gUGGGCgacccgguagacgUACAggugggcCUCGCCCCGcGGCACg -3'
miRNA:   3'- gACCCGa------------GUGU-------GAGUGGGGC-CCGUGg -5'
18429 5' -60.7 NC_004681.1 + 54629 0.71 0.288639
Target:  5'- -aGGGCUCuGCGgUgAUCUCGGGcCACCg -3'
miRNA:   3'- gaCCCGAG-UGUgAgUGGGGCCC-GUGG- -5'
18429 5' -60.7 NC_004681.1 + 19946 0.66 0.547815
Target:  5'- uUGGGCUCgguguaggacaGCAcCUCGaagCCgGGGuCACCg -3'
miRNA:   3'- gACCCGAG-----------UGU-GAGUg--GGgCCC-GUGG- -5'
18429 5' -60.7 NC_004681.1 + 51216 0.66 0.507865
Target:  5'- -aGGGCcuUCACuGCuUCACCCCacGGGagGCCg -3'
miRNA:   3'- gaCCCG--AGUG-UG-AGUGGGG--CCCg-UGG- -5'
18429 5' -60.7 NC_004681.1 + 1765 0.67 0.459768
Target:  5'- aCUGGGCcuccccggUACAUUCACCCgGGGaggUCa -3'
miRNA:   3'- -GACCCGa-------GUGUGAGUGGGgCCCgu-GG- -5'
18429 5' -60.7 NC_004681.1 + 18049 0.69 0.350538
Target:  5'- -gGGGCccaccggagccgcccUCgGCACUCACCUgCGGGgACCg -3'
miRNA:   3'- gaCCCG---------------AG-UGUGAGUGGG-GCCCgUGG- -5'
18429 5' -60.7 NC_004681.1 + 37329 0.75 0.147046
Target:  5'- --cGGCUCGCACUCuucugGCCCCGGGUg-- -3'
miRNA:   3'- gacCCGAGUGUGAG-----UGGGGCCCGugg -5'
18429 5' -60.7 NC_004681.1 + 2446 0.66 0.507865
Target:  5'- cCUGGGCcuuguuggCGCGCggCACgCagaaguGGGCGCCg -3'
miRNA:   3'- -GACCCGa-------GUGUGa-GUGgGg-----CCCGUGG- -5'
18429 5' -60.7 NC_004681.1 + 23459 0.73 0.185355
Target:  5'- -cGGGCaggaggUugAC-CACCUCGGGCGCCu -3'
miRNA:   3'- gaCCCGa-----GugUGaGUGGGGCCCGUGG- -5'
18429 5' -60.7 NC_004681.1 + 58632 0.68 0.423092
Target:  5'- cCUGGGCaUgAUugUCGCgCUCGGcCACCa -3'
miRNA:   3'- -GACCCG-AgUGugAGUG-GGGCCcGUGG- -5'
18429 5' -60.7 NC_004681.1 + 66780 0.66 0.516753
Target:  5'- uCUGGGCcguagauuUC-CAC-CACCCggccccuCGGGUACCc -3'
miRNA:   3'- -GACCCG--------AGuGUGaGUGGG-------GCCCGUGG- -5'
18429 5' -60.7 NC_004681.1 + 23742 0.71 0.287275
Target:  5'- aUGGGCUCACccgGCUCGCCgucgucggcgaaCGGG-ACCa -3'
miRNA:   3'- gACCCGAGUG---UGAGUGGg-----------GCCCgUGG- -5'
18429 5' -60.7 NC_004681.1 + 12336 0.67 0.488353
Target:  5'- -cGGGC-CACccgACUCAgCCCagaaCGGGcCACCg -3'
miRNA:   3'- gaCCCGaGUG---UGAGU-GGG----GCCC-GUGG- -5'
18429 5' -60.7 NC_004681.1 + 66628 0.68 0.423092
Target:  5'- --cGGCUCuauCGCUCuggacggcGCUCUGGGCAUCg -3'
miRNA:   3'- gacCCGAGu--GUGAG--------UGGGGCCCGUGG- -5'
18429 5' -60.7 NC_004681.1 + 16670 0.68 0.396765
Target:  5'- aCUGGuGCUgGCGacggCGCUCCGaGCACCg -3'
miRNA:   3'- -GACC-CGAgUGUga--GUGGGGCcCGUGG- -5'
18429 5' -60.7 NC_004681.1 + 32173 0.68 0.396765
Target:  5'- -aGGucGUgaaCACGCUCAaCCCGGGCACg -3'
miRNA:   3'- gaCC--CGa--GUGUGAGUgGGGCCCGUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.