miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18430 5' -55.8 NC_004681.1 + 41949 0.66 0.7975
Target:  5'- uGGGACagGUCGGcUCCGCGGagaUCGGcCc -3'
miRNA:   3'- gCCUUGa-UAGCCuGGGUGCC---AGCCaG- -5'
18430 5' -55.8 NC_004681.1 + 62126 0.66 0.7975
Target:  5'- uGGGACgGUCagaGGuguCCCACGGcCGcGUCg -3'
miRNA:   3'- gCCUUGaUAG---CCu--GGGUGCCaGC-CAG- -5'
18430 5' -55.8 NC_004681.1 + 30650 0.66 0.795633
Target:  5'- uGGAGCgagauucccgCGGACgCCGCGGUCa--- -3'
miRNA:   3'- gCCUUGaua-------GCCUG-GGUGCCAGccag -5'
18430 5' -55.8 NC_004681.1 + 9291 0.67 0.759049
Target:  5'- gCGGcAACUucuUCGGcaacGCCUACGGcaaccCGGUCa -3'
miRNA:   3'- -GCC-UUGAu--AGCC----UGGGUGCCa----GCCAG- -5'
18430 5' -55.8 NC_004681.1 + 39934 0.67 0.74911
Target:  5'- gCGcGGGCg--CGGugCgCGCGGUgCGGUCc -3'
miRNA:   3'- -GC-CUUGauaGCCugG-GUGCCA-GCCAG- -5'
18430 5' -55.8 NC_004681.1 + 29277 0.67 0.739061
Target:  5'- aGGGAUUGUgaUGGccGCCCAgGgGUUGGUCg -3'
miRNA:   3'- gCCUUGAUA--GCC--UGGGUgC-CAGCCAG- -5'
18430 5' -55.8 NC_004681.1 + 53516 0.67 0.718673
Target:  5'- gCGGGuCUcgaauUCGGugCCcuucugcuugcuGCGGUUGGUCa -3'
miRNA:   3'- -GCCUuGAu----AGCCugGG------------UGCCAGCCAG- -5'
18430 5' -55.8 NC_004681.1 + 293 0.69 0.624141
Target:  5'- uGGAACUGUCaucaccGACCCGCGGaagcaCGGg- -3'
miRNA:   3'- gCCUUGAUAGc-----CUGGGUGCCa----GCCag -5'
18430 5' -55.8 NC_004681.1 + 7576 0.7 0.586097
Target:  5'- cCGGAGCguccgaacgcaGGGCCUggcugaguCGGUCGGUCa -3'
miRNA:   3'- -GCCUUGauag-------CCUGGGu-------GCCAGCCAG- -5'
18430 5' -55.8 NC_004681.1 + 14684 0.71 0.499674
Target:  5'- aCGGccuGCUucagcUCGGcCCCACGGUgGGUUa -3'
miRNA:   3'- -GCCu--UGAu----AGCCuGGGUGCCAgCCAG- -5'
18430 5' -55.8 NC_004681.1 + 28647 1.09 0.001495
Target:  5'- gCGGAACUAUCGGACCCACGGUCGGUCu -3'
miRNA:   3'- -GCCUUGAUAGCCUGGGUGCCAGCCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.