Results 1 - 11 of 11 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18430 | 5' | -55.8 | NC_004681.1 | + | 293 | 0.69 | 0.624141 |
Target: 5'- uGGAACUGUCaucaccGACCCGCGGaagcaCGGg- -3' miRNA: 3'- gCCUUGAUAGc-----CUGGGUGCCa----GCCag -5' |
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18430 | 5' | -55.8 | NC_004681.1 | + | 7576 | 0.7 | 0.586097 |
Target: 5'- cCGGAGCguccgaacgcaGGGCCUggcugaguCGGUCGGUCa -3' miRNA: 3'- -GCCUUGauag-------CCUGGGu-------GCCAGCCAG- -5' |
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18430 | 5' | -55.8 | NC_004681.1 | + | 9291 | 0.67 | 0.759049 |
Target: 5'- gCGGcAACUucuUCGGcaacGCCUACGGcaaccCGGUCa -3' miRNA: 3'- -GCC-UUGAu--AGCC----UGGGUGCCa----GCCAG- -5' |
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18430 | 5' | -55.8 | NC_004681.1 | + | 14684 | 0.71 | 0.499674 |
Target: 5'- aCGGccuGCUucagcUCGGcCCCACGGUgGGUUa -3' miRNA: 3'- -GCCu--UGAu----AGCCuGGGUGCCAgCCAG- -5' |
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18430 | 5' | -55.8 | NC_004681.1 | + | 28647 | 1.09 | 0.001495 |
Target: 5'- gCGGAACUAUCGGACCCACGGUCGGUCu -3' miRNA: 3'- -GCCUUGAUAGCCUGGGUGCCAGCCAG- -5' |
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18430 | 5' | -55.8 | NC_004681.1 | + | 29277 | 0.67 | 0.739061 |
Target: 5'- aGGGAUUGUgaUGGccGCCCAgGgGUUGGUCg -3' miRNA: 3'- gCCUUGAUA--GCC--UGGGUgC-CAGCCAG- -5' |
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18430 | 5' | -55.8 | NC_004681.1 | + | 30650 | 0.66 | 0.795633 |
Target: 5'- uGGAGCgagauucccgCGGACgCCGCGGUCa--- -3' miRNA: 3'- gCCUUGaua-------GCCUG-GGUGCCAGccag -5' |
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18430 | 5' | -55.8 | NC_004681.1 | + | 39934 | 0.67 | 0.74911 |
Target: 5'- gCGcGGGCg--CGGugCgCGCGGUgCGGUCc -3' miRNA: 3'- -GC-CUUGauaGCCugG-GUGCCA-GCCAG- -5' |
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18430 | 5' | -55.8 | NC_004681.1 | + | 41949 | 0.66 | 0.7975 |
Target: 5'- uGGGACagGUCGGcUCCGCGGagaUCGGcCc -3' miRNA: 3'- gCCUUGa-UAGCCuGGGUGCC---AGCCaG- -5' |
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18430 | 5' | -55.8 | NC_004681.1 | + | 53516 | 0.67 | 0.718673 |
Target: 5'- gCGGGuCUcgaauUCGGugCCcuucugcuugcuGCGGUUGGUCa -3' miRNA: 3'- -GCCUuGAu----AGCCugGG------------UGCCAGCCAG- -5' |
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18430 | 5' | -55.8 | NC_004681.1 | + | 62126 | 0.66 | 0.7975 |
Target: 5'- uGGGACgGUCagaGGuguCCCACGGcCGcGUCg -3' miRNA: 3'- gCCUUGaUAG---CCu--GGGUGCCaGC-CAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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