Results 1 - 20 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18431 | 3' | -53.9 | NC_004681.1 | + | 5299 | 0.66 | 0.845276 |
Target: 5'- uCUGugGCGacagcUCGGCCaUGGCGGGcGCGg -3' miRNA: 3'- cGAUugCGU-----GGCUGG-ACUGCCCaUGU- -5' |
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18431 | 3' | -53.9 | NC_004681.1 | + | 5673 | 0.7 | 0.645382 |
Target: 5'- aCUGuuGCGCuugauGgCGACCcgUGACGGGUGCAu -3' miRNA: 3'- cGAU--UGCG-----UgGCUGG--ACUGCCCAUGU- -5' |
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18431 | 3' | -53.9 | NC_004681.1 | + | 7484 | 0.66 | 0.869727 |
Target: 5'- uGCguucgGACGCuCCGgucgauGCCUGGgccUGGGUGCGc -3' miRNA: 3'- -CGa----UUGCGuGGC------UGGACU---GCCCAUGU- -5' |
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18431 | 3' | -53.9 | NC_004681.1 | + | 13127 | 0.69 | 0.730586 |
Target: 5'- cGCUGccCGcCACCGcCCUucguggcacGGCGGGUACGg -3' miRNA: 3'- -CGAUu-GC-GUGGCuGGA---------CUGCCCAUGU- -5' |
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18431 | 3' | -53.9 | NC_004681.1 | + | 15058 | 0.74 | 0.419034 |
Target: 5'- uGCUcGCGCAgaUGACCcaGACGGGUGCGu -3' miRNA: 3'- -CGAuUGCGUg-GCUGGa-CUGCCCAUGU- -5' |
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18431 | 3' | -53.9 | NC_004681.1 | + | 16675 | 0.77 | 0.280025 |
Target: 5'- uGCUGGCgacggcgcuccgaGCACCGGCCUGuuccCGGGUAUg -3' miRNA: 3'- -CGAUUG-------------CGUGGCUGGACu---GCCCAUGu -5' |
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18431 | 3' | -53.9 | NC_004681.1 | + | 18235 | 0.74 | 0.45709 |
Target: 5'- gGCguggggAACGgGCCGACCUGACccGGUGCc -3' miRNA: 3'- -CGa-----UUGCgUGGCUGGACUGc-CCAUGu -5' |
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18431 | 3' | -53.9 | NC_004681.1 | + | 19371 | 0.74 | 0.437825 |
Target: 5'- --cGACcaCACCGGCCUgggcGACGGGUACAu -3' miRNA: 3'- cgaUUGc-GUGGCUGGA----CUGCCCAUGU- -5' |
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18431 | 3' | -53.9 | NC_004681.1 | + | 19693 | 0.69 | 0.699053 |
Target: 5'- cGC-AGCGCGCCcagagcucguuGACC--GCGGGUGCGg -3' miRNA: 3'- -CGaUUGCGUGG-----------CUGGacUGCCCAUGU- -5' |
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18431 | 3' | -53.9 | NC_004681.1 | + | 20020 | 0.66 | 0.869727 |
Target: 5'- cGCUGucgaacCGCGgaGACCagGACGGGUGg- -3' miRNA: 3'- -CGAUu-----GCGUggCUGGa-CUGCCCAUgu -5' |
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18431 | 3' | -53.9 | NC_004681.1 | + | 23855 | 0.66 | 0.869727 |
Target: 5'- aGCUGGauCAgCGGCCUGACGG--ACAc -3' miRNA: 3'- -CGAUUgcGUgGCUGGACUGCCcaUGU- -5' |
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18431 | 3' | -53.9 | NC_004681.1 | + | 25287 | 0.66 | 0.861806 |
Target: 5'- uGCcAGCGcCGCCaggGGCCUGAcCGGGgcCAc -3' miRNA: 3'- -CGaUUGC-GUGG---CUGGACU-GCCCauGU- -5' |
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18431 | 3' | -53.9 | NC_004681.1 | + | 28163 | 0.67 | 0.836684 |
Target: 5'- gGC-AGCgGCACCGGCaCUGACGcaGGUGa- -3' miRNA: 3'- -CGaUUG-CGUGGCUG-GACUGC--CCAUgu -5' |
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18431 | 3' | -53.9 | NC_004681.1 | + | 29932 | 1.02 | 0.006399 |
Target: 5'- aGCUAACGC-CCGACCUGACGGGUACAg -3' miRNA: 3'- -CGAUUGCGuGGCUGGACUGCCCAUGU- -5' |
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18431 | 3' | -53.9 | NC_004681.1 | + | 30073 | 0.69 | 0.699053 |
Target: 5'- uGUUGGggguUGgGCCGACCUGGCGGGc--- -3' miRNA: 3'- -CGAUU----GCgUGGCUGGACUGCCCaugu -5' |
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18431 | 3' | -53.9 | NC_004681.1 | + | 30196 | 0.74 | 0.437825 |
Target: 5'- cCUGACgGCACCGACaaGAUGGaGUGCGg -3' miRNA: 3'- cGAUUG-CGUGGCUGgaCUGCC-CAUGU- -5' |
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18431 | 3' | -53.9 | NC_004681.1 | + | 30592 | 0.69 | 0.740922 |
Target: 5'- --aGGCGguUCGcuGCCUGACGGcGUGCGu -3' miRNA: 3'- cgaUUGCguGGC--UGGACUGCC-CAUGU- -5' |
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18431 | 3' | -53.9 | NC_004681.1 | + | 30980 | 0.67 | 0.827884 |
Target: 5'- --gGACGCACaagGACCUGGacUGGGcGCAc -3' miRNA: 3'- cgaUUGCGUGg--CUGGACU--GCCCaUGU- -5' |
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18431 | 3' | -53.9 | NC_004681.1 | + | 33985 | 0.66 | 0.88485 |
Target: 5'- ----uUGuCACCGACCU--CGGGUACGc -3' miRNA: 3'- cgauuGC-GUGGCUGGAcuGCCCAUGU- -5' |
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18431 | 3' | -53.9 | NC_004681.1 | + | 39356 | 0.67 | 0.818885 |
Target: 5'- cGCUGugG-AUCGGCCUGGgGGGa--- -3' miRNA: 3'- -CGAUugCgUGGCUGGACUgCCCaugu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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