miRNA display CGI


Results 21 - 40 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18431 5' -60.8 NC_004681.1 + 14913 0.67 0.489115
Target:  5'- gCCCacGCCCucgguacggGCCAGcUgGGCgCCAGCCu -3'
miRNA:   3'- -GGGaaCGGG---------CGGUCcAgCCG-GGUUGG- -5'
18431 5' -60.8 NC_004681.1 + 24199 0.67 0.479556
Target:  5'- ----cGUCCGCCAGGcUGGCgCCGgaACCu -3'
miRNA:   3'- gggaaCGGGCGGUCCaGCCG-GGU--UGG- -5'
18431 5' -60.8 NC_004681.1 + 12225 0.67 0.470089
Target:  5'- cCCCggugGCCCGUucugggcugaguCGGGU-GGCCCGgugcugugGCCg -3'
miRNA:   3'- -GGGaa--CGGGCG------------GUCCAgCCGGGU--------UGG- -5'
18431 5' -60.8 NC_004681.1 + 51960 0.67 0.460719
Target:  5'- aCCaggUGCCUGCCgcgaGGaGUCGGCUgAACa -3'
miRNA:   3'- -GGga-ACGGGCGG----UC-CAGCCGGgUUGg -5'
18431 5' -60.8 NC_004681.1 + 19464 0.67 0.451449
Target:  5'- gCCCagGCCgGUguGGUCGaCCCggUCg -3'
miRNA:   3'- -GGGaaCGGgCGguCCAGCcGGGuuGG- -5'
18431 5' -60.8 NC_004681.1 + 33725 0.67 0.451449
Target:  5'- aCCUgcGCCU-CCAGGUCGGC--GACCu -3'
miRNA:   3'- -GGGaaCGGGcGGUCCAGCCGggUUGG- -5'
18431 5' -60.8 NC_004681.1 + 19089 0.67 0.451449
Target:  5'- aCCCUUGCuuGUCAGGUgGGUg----- -3'
miRNA:   3'- -GGGAACGggCGGUCCAgCCGgguugg -5'
18431 5' -60.8 NC_004681.1 + 53346 0.68 0.442281
Target:  5'- aCCCUUGgCCGCCuGGUgcaGGUgCCAcucgacACCu -3'
miRNA:   3'- -GGGAACgGGCGGuCCAg--CCG-GGU------UGG- -5'
18431 5' -60.8 NC_004681.1 + 67430 0.68 0.442281
Target:  5'- aCCagGCCCugcgacacgGCCAGGUCGaggaGUUCGACCu -3'
miRNA:   3'- gGGaaCGGG---------CGGUCCAGC----CGGGUUGG- -5'
18431 5' -60.8 NC_004681.1 + 63432 0.68 0.43322
Target:  5'- uCCCUgGCCa-CCAGGcuuccagccUCGGCCgGAUCa -3'
miRNA:   3'- -GGGAaCGGgcGGUCC---------AGCCGGgUUGG- -5'
18431 5' -60.8 NC_004681.1 + 482 0.68 0.43322
Target:  5'- gCCCUUGCC--CCAGGUCuugaccgcgGGCUCGuCCu -3'
miRNA:   3'- -GGGAACGGgcGGUCCAG---------CCGGGUuGG- -5'
18431 5' -60.8 NC_004681.1 + 10839 0.68 0.424268
Target:  5'- gCCCUUGUCC-CaguGGUCGcggacGCCCAGCa -3'
miRNA:   3'- -GGGAACGGGcGgu-CCAGC-----CGGGUUGg -5'
18431 5' -60.8 NC_004681.1 + 1646 0.68 0.424268
Target:  5'- cCCCgccGCCCaGCUgaAGGcUGGCCCGgucACCa -3'
miRNA:   3'- -GGGaa-CGGG-CGG--UCCaGCCGGGU---UGG- -5'
18431 5' -60.8 NC_004681.1 + 15026 0.68 0.415427
Target:  5'- cCCCaaGUcguucgUCGCgCAGGUCGGCaCCAugCu -3'
miRNA:   3'- -GGGaaCG------GGCG-GUCCAGCCG-GGUugG- -5'
18431 5' -60.8 NC_004681.1 + 5790 0.68 0.412796
Target:  5'- cUCCa-GCCCGUCAGGguugaagaagcggaUCGGCaCGACCu -3'
miRNA:   3'- -GGGaaCGGGCGGUCC--------------AGCCGgGUUGG- -5'
18431 5' -60.8 NC_004681.1 + 13552 0.68 0.397234
Target:  5'- --aUUGCCCGCgAGGuccuucaUCGGCUC-GCCg -3'
miRNA:   3'- gggAACGGGCGgUCC-------AGCCGGGuUGG- -5'
18431 5' -60.8 NC_004681.1 + 14265 0.69 0.389595
Target:  5'- uUCCUUGCCCGCCuuGcCGaagauGCCCugcACCu -3'
miRNA:   3'- -GGGAACGGGCGGucCaGC-----CGGGu--UGG- -5'
18431 5' -60.8 NC_004681.1 + 44893 0.69 0.389595
Target:  5'- gUCUUGCCCaccuCCAGGgCGGUCCAGa- -3'
miRNA:   3'- gGGAACGGGc---GGUCCaGCCGGGUUgg -5'
18431 5' -60.8 NC_004681.1 + 49484 0.69 0.389595
Target:  5'- gCCCUacUGCCCagucGCCgGGGUCcuGCgCAACCa -3'
miRNA:   3'- -GGGA--ACGGG----CGG-UCCAGc-CGgGUUGG- -5'
18431 5' -60.8 NC_004681.1 + 39197 0.69 0.381222
Target:  5'- gUgUUGCCCGCgCAGGU-GGCC--ACCa -3'
miRNA:   3'- gGgAACGGGCG-GUCCAgCCGGguUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.