miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18432 3' -63.8 NC_004681.1 + 19901 0.66 0.387515
Target:  5'- aGCaCGCGGUacuggCGGCCguucuuagCGGAGC-Cg -3'
miRNA:   3'- gCG-GCGCCGgua--GCCGGa-------GCCUCGaG- -5'
18432 3' -63.8 NC_004681.1 + 62950 0.66 0.387515
Target:  5'- gGUCGCGGUCcuucUCGGCgcgCUCGGuGCg- -3'
miRNA:   3'- gCGGCGCCGGu---AGCCG---GAGCCuCGag -5'
18432 3' -63.8 NC_004681.1 + 9105 0.66 0.387515
Target:  5'- gCGCCGCuGGCuCGggcucUGGCgUUGcGGGCUCg -3'
miRNA:   3'- -GCGGCG-CCG-GUa----GCCGgAGC-CUCGAG- -5'
18432 3' -63.8 NC_004681.1 + 13682 0.66 0.387515
Target:  5'- uGgCGUGGCCGcccgCGGCCUUGaAGCg- -3'
miRNA:   3'- gCgGCGCCGGUa---GCCGGAGCcUCGag -5'
18432 3' -63.8 NC_004681.1 + 53265 0.66 0.371102
Target:  5'- uGUCGCGGCCAUgaggaaguccgUGGCCg-GGuGaCUCa -3'
miRNA:   3'- gCGGCGCCGGUA-----------GCCGGagCCuC-GAG- -5'
18432 3' -63.8 NC_004681.1 + 44986 0.66 0.371102
Target:  5'- uGCUGCauCC-UCGGCCUCGuGGGCgUCg -3'
miRNA:   3'- gCGGCGccGGuAGCCGGAGC-CUCG-AG- -5'
18432 3' -63.8 NC_004681.1 + 6980 0.66 0.368682
Target:  5'- uGCCGUGGUCGacgucgagcgggacUCGGUCgggaaGGGGUUCc -3'
miRNA:   3'- gCGGCGCCGGU--------------AGCCGGag---CCUCGAG- -5'
18432 3' -63.8 NC_004681.1 + 32017 0.66 0.363076
Target:  5'- gCGCCGCGGgUGUCGGCaCggcCGGuGUg- -3'
miRNA:   3'- -GCGGCGCCgGUAGCCG-Ga--GCCuCGag -5'
18432 3' -63.8 NC_004681.1 + 7259 0.66 0.355171
Target:  5'- aCGaCGCGGCCGUCcaCCUCGGcGC-Cg -3'
miRNA:   3'- -GCgGCGCCGGUAGccGGAGCCuCGaG- -5'
18432 3' -63.8 NC_004681.1 + 8378 0.66 0.355171
Target:  5'- uCG-CGCGGUCAUCaugaaCC-CGGAGCUCa -3'
miRNA:   3'- -GCgGCGCCGGUAGcc---GGaGCCUCGAG- -5'
18432 3' -63.8 NC_004681.1 + 50011 0.67 0.347388
Target:  5'- -cCCGCGcGCCGUCuGGCCgcgcuacaaGGAGCg- -3'
miRNA:   3'- gcGGCGC-CGGUAG-CCGGag-------CCUCGag -5'
18432 3' -63.8 NC_004681.1 + 33750 0.67 0.347388
Target:  5'- gGaaGCGGCCGagcgCGGCUg-GGAGCUUc -3'
miRNA:   3'- gCggCGCCGGUa---GCCGGagCCUCGAG- -5'
18432 3' -63.8 NC_004681.1 + 46934 0.67 0.324776
Target:  5'- uGCCGgGGCgGUU-GCCgCGGGGCUg -3'
miRNA:   3'- gCGGCgCCGgUAGcCGGaGCCUCGAg -5'
18432 3' -63.8 NC_004681.1 + 18377 0.67 0.324776
Target:  5'- gGaCUGCGGCCGUgcCGcGCC-CGGAGUUg -3'
miRNA:   3'- gC-GGCGCCGGUA--GC-CGGaGCCUCGAg -5'
18432 3' -63.8 NC_004681.1 + 10670 0.67 0.317486
Target:  5'- uGcCCGCGGCCGUCGcguGCaaggCGGgagacaAGCUCa -3'
miRNA:   3'- gC-GGCGCCGGUAGC---CGga--GCC------UCGAG- -5'
18432 3' -63.8 NC_004681.1 + 28227 0.67 0.31032
Target:  5'- cCGCCGCcGCCGUUGcCCgCGGGGCcgUCg -3'
miRNA:   3'- -GCGGCGcCGGUAGCcGGaGCCUCG--AG- -5'
18432 3' -63.8 NC_004681.1 + 51319 0.67 0.31032
Target:  5'- cCGCCGaCGucaucaCCGUC-GCCgCGGAGCUCg -3'
miRNA:   3'- -GCGGC-GCc-----GGUAGcCGGaGCCUCGAG- -5'
18432 3' -63.8 NC_004681.1 + 74981 0.67 0.31032
Target:  5'- aGCCaGCGGCCGUcaCGGUCUCGauAGcCUCc -3'
miRNA:   3'- gCGG-CGCCGGUA--GCCGGAGCc-UC-GAG- -5'
18432 3' -63.8 NC_004681.1 + 11150 0.67 0.31032
Target:  5'- aGuCCGUGGCCAUCacacgaGCCUUGGGuaggcccgacuuGCUCu -3'
miRNA:   3'- gC-GGCGCCGGUAGc-----CGGAGCCU------------CGAG- -5'
18432 3' -63.8 NC_004681.1 + 27763 0.67 0.31032
Target:  5'- cCGCCGCcGCCGuaUCGGUaacCGGAGUUg -3'
miRNA:   3'- -GCGGCGcCGGU--AGCCGga-GCCUCGAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.