miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18432 3' -63.8 NC_004681.1 + 30044 1.08 0.000299
Target:  5'- cCGCCGCGGCCAUCGGCCUCGGAGCUCc -3'
miRNA:   3'- -GCGGCGCCGGUAGCCGGAGCCUCGAG- -5'
18432 3' -63.8 NC_004681.1 + 38041 0.85 0.016064
Target:  5'- gGCCGagGGCCAUcCGGCCUCGGGGCUg -3'
miRNA:   3'- gCGGCg-CCGGUA-GCCGGAGCCUCGAg -5'
18432 3' -63.8 NC_004681.1 + 61762 0.81 0.034585
Target:  5'- aGaCCGCGGCCGccaUCGGCCa-GGAGCUCu -3'
miRNA:   3'- gC-GGCGCCGGU---AGCCGGagCCUCGAG- -5'
18432 3' -63.8 NC_004681.1 + 17582 0.76 0.077678
Target:  5'- aCGCCGCGGCCAagcgccgugguaUCGGCggCUCGGGcGCg- -3'
miRNA:   3'- -GCGGCGCCGGU------------AGCCG--GAGCCU-CGag -5'
18432 3' -63.8 NC_004681.1 + 70011 0.76 0.079772
Target:  5'- uGcCCGCuGGCUuUCGcGUCUCGGAGCUCa -3'
miRNA:   3'- gC-GGCG-CCGGuAGC-CGGAGCCUCGAG- -5'
18432 3' -63.8 NC_004681.1 + 9371 0.73 0.137206
Target:  5'- uGCCGCccauguacuGGCCAUUGGCgUCcuucgucaggcgcaGGAGCUCc -3'
miRNA:   3'- gCGGCG---------CCGGUAGCCGgAG--------------CCUCGAG- -5'
18432 3' -63.8 NC_004681.1 + 44228 0.73 0.138269
Target:  5'- gGCCa-GGCCcgCGGCCUCGGGGgUg -3'
miRNA:   3'- gCGGcgCCGGuaGCCGGAGCCUCgAg -5'
18432 3' -63.8 NC_004681.1 + 2018 0.72 0.153178
Target:  5'- gGCCGCGGCCAggUGGUCgUGGAGggCg -3'
miRNA:   3'- gCGGCGCCGGUa-GCCGGaGCCUCgaG- -5'
18432 3' -63.8 NC_004681.1 + 30872 0.72 0.153178
Target:  5'- uGgCGCGGCCGUUGGugaccaggcCCUUGGAGCcCg -3'
miRNA:   3'- gCgGCGCCGGUAGCC---------GGAGCCUCGaG- -5'
18432 3' -63.8 NC_004681.1 + 47222 0.71 0.165303
Target:  5'- uCGgCGCGGCCcUCGGCguuCUCGucGCUCa -3'
miRNA:   3'- -GCgGCGCCGGuAGCCG---GAGCcuCGAG- -5'
18432 3' -63.8 NC_004681.1 + 8532 0.71 0.18743
Target:  5'- -cCCGCGGCCAUCGGCCagaaccccuUCGG--UUCg -3'
miRNA:   3'- gcGGCGCCGGUAGCCGG---------AGCCucGAG- -5'
18432 3' -63.8 NC_004681.1 + 6611 0.7 0.206972
Target:  5'- gCGCCGCGGC--UCGGUCUuccccgaguccgUGGAGCg- -3'
miRNA:   3'- -GCGGCGCCGguAGCCGGA------------GCCUCGag -5'
18432 3' -63.8 NC_004681.1 + 75518 0.7 0.222763
Target:  5'- gCGCCGCgaguacGGCCGcgcggaauUCGGUCUCGu-GCUCg -3'
miRNA:   3'- -GCGGCG------CCGGU--------AGCCGGAGCcuCGAG- -5'
18432 3' -63.8 NC_004681.1 + 8559 0.7 0.222763
Target:  5'- uGCCGgGGUCAgccGCCUUGGcGCUCa -3'
miRNA:   3'- gCGGCgCCGGUagcCGGAGCCuCGAG- -5'
18432 3' -63.8 NC_004681.1 + 17914 0.69 0.22825
Target:  5'- uGCCuugcGCGGCCgccgcguugauGUCGGCCUgCGuGGGCUg -3'
miRNA:   3'- gCGG----CGCCGG-----------UAGCCGGA-GC-CUCGAg -5'
18432 3' -63.8 NC_004681.1 + 40574 0.69 0.239567
Target:  5'- uCGUgGCGG-CGUCGGCCgCGGcGUUCa -3'
miRNA:   3'- -GCGgCGCCgGUAGCCGGaGCCuCGAG- -5'
18432 3' -63.8 NC_004681.1 + 17483 0.69 0.245399
Target:  5'- uGCC-UGGCaugggCGGCCUCGGAGaCUUc -3'
miRNA:   3'- gCGGcGCCGgua--GCCGGAGCCUC-GAG- -5'
18432 3' -63.8 NC_004681.1 + 45074 0.69 0.251349
Target:  5'- cCGCCGCGGUCga-GGCCcucgccgCGGucucGCUCa -3'
miRNA:   3'- -GCGGCGCCGGuagCCGGa------GCCu---CGAG- -5'
18432 3' -63.8 NC_004681.1 + 46448 0.68 0.262357
Target:  5'- -cCCGCGGCCugcuccgguaccUCGGCCU-GGAGgUCu -3'
miRNA:   3'- gcGGCGCCGGu-----------AGCCGGAgCCUCgAG- -5'
18432 3' -63.8 NC_004681.1 + 24298 0.68 0.263604
Target:  5'- gGCCGCGGUUgAUCGGCUugUUGGuGCg- -3'
miRNA:   3'- gCGGCGCCGG-UAGCCGG--AGCCuCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.