miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18432 3' -63.8 NC_004681.1 + 60693 0.68 0.263604
Target:  5'- uGCCGCaGCgG-CGGCCUCGucGAGCa- -3'
miRNA:   3'- gCGGCGcCGgUaGCCGGAGC--CUCGag -5'
18432 3' -63.8 NC_004681.1 + 39786 0.68 0.269912
Target:  5'- cCGCCGCGcGaCCAUCGccucccacGCCUCguGGGGCa- -3'
miRNA:   3'- -GCGGCGC-C-GGUAGC--------CGGAG--CCUCGag -5'
18432 3' -63.8 NC_004681.1 + 14552 0.68 0.269912
Target:  5'- gCGCgCGCGGCguUCGccuccGCCUCGcGGGCg- -3'
miRNA:   3'- -GCG-GCGCCGguAGC-----CGGAGC-CUCGag -5'
18432 3' -63.8 NC_004681.1 + 60556 0.68 0.27634
Target:  5'- aCGCCGCacgccucgGGCCGcUGGCCgacgaacgUGGuGCUCg -3'
miRNA:   3'- -GCGGCG--------CCGGUaGCCGGa-------GCCuCGAG- -5'
18432 3' -63.8 NC_004681.1 + 37043 0.68 0.28223
Target:  5'- cCGCCGCGuggagucGCCuacUGGaugaCUCGGAGUUCg -3'
miRNA:   3'- -GCGGCGC-------CGGua-GCCg---GAGCCUCGAG- -5'
18432 3' -63.8 NC_004681.1 + 15670 0.68 0.282891
Target:  5'- aCGCCaaCGGCgaCGUCGagcacGCCUCGGAGgUCa -3'
miRNA:   3'- -GCGGc-GCCG--GUAGC-----CGGAGCCUCgAG- -5'
18432 3' -63.8 NC_004681.1 + 71664 0.68 0.282891
Target:  5'- aCGuuGCGGCCGUCcGCg-CGGAaCUCa -3'
miRNA:   3'- -GCggCGCCGGUAGcCGgaGCCUcGAG- -5'
18432 3' -63.8 NC_004681.1 + 5966 0.68 0.285545
Target:  5'- uGCgCGCGGUCGaacuguUCGcgcaggcgcugcugaGCCUCGGGGCUg -3'
miRNA:   3'- gCG-GCGCCGGU------AGC---------------CGGAGCCUCGAg -5'
18432 3' -63.8 NC_004681.1 + 46795 0.68 0.289563
Target:  5'- -cCCGCGcGCCGUCgaGGaauaCUCGGAGCg- -3'
miRNA:   3'- gcGGCGC-CGGUAG--CCg---GAGCCUCGag -5'
18432 3' -63.8 NC_004681.1 + 52951 0.68 0.296359
Target:  5'- gGCCGaUGGCCAgccuUCcGCC-CGGaAGCUCa -3'
miRNA:   3'- gCGGC-GCCGGU----AGcCGGaGCC-UCGAG- -5'
18432 3' -63.8 NC_004681.1 + 2980 0.68 0.296359
Target:  5'- -uUCGCGGCCAUCGaGCagcCGGAuacccGCUCu -3'
miRNA:   3'- gcGGCGCCGGUAGC-CGga-GCCU-----CGAG- -5'
18432 3' -63.8 NC_004681.1 + 51319 0.67 0.31032
Target:  5'- cCGCCGaCGucaucaCCGUC-GCCgCGGAGCUCg -3'
miRNA:   3'- -GCGGC-GCc-----GGUAGcCGGaGCCUCGAG- -5'
18432 3' -63.8 NC_004681.1 + 27763 0.67 0.31032
Target:  5'- cCGCCGCcGCCGuaUCGGUaacCGGAGUUg -3'
miRNA:   3'- -GCGGCGcCGGU--AGCCGga-GCCUCGAg -5'
18432 3' -63.8 NC_004681.1 + 74981 0.67 0.31032
Target:  5'- aGCCaGCGGCCGUcaCGGUCUCGauAGcCUCc -3'
miRNA:   3'- gCGG-CGCCGGUA--GCCGGAGCc-UC-GAG- -5'
18432 3' -63.8 NC_004681.1 + 28227 0.67 0.31032
Target:  5'- cCGCCGCcGCCGUUGcCCgCGGGGCcgUCg -3'
miRNA:   3'- -GCGGCGcCGGUAGCcGGaGCCUCG--AG- -5'
18432 3' -63.8 NC_004681.1 + 11150 0.67 0.31032
Target:  5'- aGuCCGUGGCCAUCacacgaGCCUUGGGuaggcccgacuuGCUCu -3'
miRNA:   3'- gC-GGCGCCGGUAGc-----CGGAGCCU------------CGAG- -5'
18432 3' -63.8 NC_004681.1 + 10670 0.67 0.317486
Target:  5'- uGcCCGCGGCCGUCGcguGCaaggCGGgagacaAGCUCa -3'
miRNA:   3'- gC-GGCGCCGGUAGC---CGga--GCC------UCGAG- -5'
18432 3' -63.8 NC_004681.1 + 46934 0.67 0.324776
Target:  5'- uGCCGgGGCgGUU-GCCgCGGGGCUg -3'
miRNA:   3'- gCGGCgCCGgUAGcCGGaGCCUCGAg -5'
18432 3' -63.8 NC_004681.1 + 18377 0.67 0.324776
Target:  5'- gGaCUGCGGCCGUgcCGcGCC-CGGAGUUg -3'
miRNA:   3'- gC-GGCGCCGGUA--GC-CGGaGCCUCGAg -5'
18432 3' -63.8 NC_004681.1 + 33750 0.67 0.347388
Target:  5'- gGaaGCGGCCGagcgCGGCUg-GGAGCUUc -3'
miRNA:   3'- gCggCGCCGGUa---GCCGGagCCUCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.