Results 21 - 40 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
18432 | 3' | -63.8 | NC_004681.1 | + | 2980 | 0.68 | 0.296359 |
Target: 5'- -uUCGCGGCCAUCGaGCagcCGGAuacccGCUCu -3' miRNA: 3'- gcGGCGCCGGUAGC-CGga-GCCU-----CGAG- -5' |
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18432 | 3' | -63.8 | NC_004681.1 | + | 52951 | 0.68 | 0.296359 |
Target: 5'- gGCCGaUGGCCAgccuUCcGCC-CGGaAGCUCa -3' miRNA: 3'- gCGGC-GCCGGU----AGcCGGaGCC-UCGAG- -5' |
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18432 | 3' | -63.8 | NC_004681.1 | + | 46795 | 0.68 | 0.289563 |
Target: 5'- -cCCGCGcGCCGUCgaGGaauaCUCGGAGCg- -3' miRNA: 3'- gcGGCGC-CGGUAG--CCg---GAGCCUCGag -5' |
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18432 | 3' | -63.8 | NC_004681.1 | + | 5966 | 0.68 | 0.285545 |
Target: 5'- uGCgCGCGGUCGaacuguUCGcgcaggcgcugcugaGCCUCGGGGCUg -3' miRNA: 3'- gCG-GCGCCGGU------AGC---------------CGGAGCCUCGAg -5' |
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18432 | 3' | -63.8 | NC_004681.1 | + | 71664 | 0.68 | 0.282891 |
Target: 5'- aCGuuGCGGCCGUCcGCg-CGGAaCUCa -3' miRNA: 3'- -GCggCGCCGGUAGcCGgaGCCUcGAG- -5' |
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18432 | 3' | -63.8 | NC_004681.1 | + | 15670 | 0.68 | 0.282891 |
Target: 5'- aCGCCaaCGGCgaCGUCGagcacGCCUCGGAGgUCa -3' miRNA: 3'- -GCGGc-GCCG--GUAGC-----CGGAGCCUCgAG- -5' |
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18432 | 3' | -63.8 | NC_004681.1 | + | 37043 | 0.68 | 0.28223 |
Target: 5'- cCGCCGCGuggagucGCCuacUGGaugaCUCGGAGUUCg -3' miRNA: 3'- -GCGGCGC-------CGGua-GCCg---GAGCCUCGAG- -5' |
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18432 | 3' | -63.8 | NC_004681.1 | + | 60556 | 0.68 | 0.27634 |
Target: 5'- aCGCCGCacgccucgGGCCGcUGGCCgacgaacgUGGuGCUCg -3' miRNA: 3'- -GCGGCG--------CCGGUaGCCGGa-------GCCuCGAG- -5' |
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18432 | 3' | -63.8 | NC_004681.1 | + | 14552 | 0.68 | 0.269912 |
Target: 5'- gCGCgCGCGGCguUCGccuccGCCUCGcGGGCg- -3' miRNA: 3'- -GCG-GCGCCGguAGC-----CGGAGC-CUCGag -5' |
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18432 | 3' | -63.8 | NC_004681.1 | + | 39786 | 0.68 | 0.269912 |
Target: 5'- cCGCCGCGcGaCCAUCGccucccacGCCUCguGGGGCa- -3' miRNA: 3'- -GCGGCGC-C-GGUAGC--------CGGAG--CCUCGag -5' |
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18432 | 3' | -63.8 | NC_004681.1 | + | 24298 | 0.68 | 0.263604 |
Target: 5'- gGCCGCGGUUgAUCGGCUugUUGGuGCg- -3' miRNA: 3'- gCGGCGCCGG-UAGCCGG--AGCCuCGag -5' |
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18432 | 3' | -63.8 | NC_004681.1 | + | 60693 | 0.68 | 0.263604 |
Target: 5'- uGCCGCaGCgG-CGGCCUCGucGAGCa- -3' miRNA: 3'- gCGGCGcCGgUaGCCGGAGC--CUCGag -5' |
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18432 | 3' | -63.8 | NC_004681.1 | + | 46448 | 0.68 | 0.262357 |
Target: 5'- -cCCGCGGCCugcuccgguaccUCGGCCU-GGAGgUCu -3' miRNA: 3'- gcGGCGCCGGu-----------AGCCGGAgCCUCgAG- -5' |
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18432 | 3' | -63.8 | NC_004681.1 | + | 45074 | 0.69 | 0.251349 |
Target: 5'- cCGCCGCGGUCga-GGCCcucgccgCGGucucGCUCa -3' miRNA: 3'- -GCGGCGCCGGuagCCGGa------GCCu---CGAG- -5' |
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18432 | 3' | -63.8 | NC_004681.1 | + | 17483 | 0.69 | 0.245399 |
Target: 5'- uGCC-UGGCaugggCGGCCUCGGAGaCUUc -3' miRNA: 3'- gCGGcGCCGgua--GCCGGAGCCUC-GAG- -5' |
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18432 | 3' | -63.8 | NC_004681.1 | + | 40574 | 0.69 | 0.239567 |
Target: 5'- uCGUgGCGG-CGUCGGCCgCGGcGUUCa -3' miRNA: 3'- -GCGgCGCCgGUAGCCGGaGCCuCGAG- -5' |
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18432 | 3' | -63.8 | NC_004681.1 | + | 17914 | 0.69 | 0.22825 |
Target: 5'- uGCCuugcGCGGCCgccgcguugauGUCGGCCUgCGuGGGCUg -3' miRNA: 3'- gCGG----CGCCGG-----------UAGCCGGA-GC-CUCGAg -5' |
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18432 | 3' | -63.8 | NC_004681.1 | + | 8559 | 0.7 | 0.222763 |
Target: 5'- uGCCGgGGUCAgccGCCUUGGcGCUCa -3' miRNA: 3'- gCGGCgCCGGUagcCGGAGCCuCGAG- -5' |
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18432 | 3' | -63.8 | NC_004681.1 | + | 75518 | 0.7 | 0.222763 |
Target: 5'- gCGCCGCgaguacGGCCGcgcggaauUCGGUCUCGu-GCUCg -3' miRNA: 3'- -GCGGCG------CCGGU--------AGCCGGAGCcuCGAG- -5' |
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18432 | 3' | -63.8 | NC_004681.1 | + | 6611 | 0.7 | 0.206972 |
Target: 5'- gCGCCGCGGC--UCGGUCUuccccgaguccgUGGAGCg- -3' miRNA: 3'- -GCGGCGCCGguAGCCGGA------------GCCUCGag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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