miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18432 3' -63.8 NC_004681.1 + 2018 0.72 0.153178
Target:  5'- gGCCGCGGCCAggUGGUCgUGGAGggCg -3'
miRNA:   3'- gCGGCGCCGGUa-GCCGGaGCCUCgaG- -5'
18432 3' -63.8 NC_004681.1 + 2980 0.68 0.296359
Target:  5'- -uUCGCGGCCAUCGaGCagcCGGAuacccGCUCu -3'
miRNA:   3'- gcGGCGCCGGUAGC-CGga-GCCU-----CGAG- -5'
18432 3' -63.8 NC_004681.1 + 5966 0.68 0.285545
Target:  5'- uGCgCGCGGUCGaacuguUCGcgcaggcgcugcugaGCCUCGGGGCUg -3'
miRNA:   3'- gCG-GCGCCGGU------AGC---------------CGGAGCCUCGAg -5'
18432 3' -63.8 NC_004681.1 + 6611 0.7 0.206972
Target:  5'- gCGCCGCGGC--UCGGUCUuccccgaguccgUGGAGCg- -3'
miRNA:   3'- -GCGGCGCCGguAGCCGGA------------GCCUCGag -5'
18432 3' -63.8 NC_004681.1 + 6980 0.66 0.368682
Target:  5'- uGCCGUGGUCGacgucgagcgggacUCGGUCgggaaGGGGUUCc -3'
miRNA:   3'- gCGGCGCCGGU--------------AGCCGGag---CCUCGAG- -5'
18432 3' -63.8 NC_004681.1 + 7259 0.66 0.355171
Target:  5'- aCGaCGCGGCCGUCcaCCUCGGcGC-Cg -3'
miRNA:   3'- -GCgGCGCCGGUAGccGGAGCCuCGaG- -5'
18432 3' -63.8 NC_004681.1 + 8378 0.66 0.355171
Target:  5'- uCG-CGCGGUCAUCaugaaCC-CGGAGCUCa -3'
miRNA:   3'- -GCgGCGCCGGUAGcc---GGaGCCUCGAG- -5'
18432 3' -63.8 NC_004681.1 + 8532 0.71 0.18743
Target:  5'- -cCCGCGGCCAUCGGCCagaaccccuUCGG--UUCg -3'
miRNA:   3'- gcGGCGCCGGUAGCCGG---------AGCCucGAG- -5'
18432 3' -63.8 NC_004681.1 + 8559 0.7 0.222763
Target:  5'- uGCCGgGGUCAgccGCCUUGGcGCUCa -3'
miRNA:   3'- gCGGCgCCGGUagcCGGAGCCuCGAG- -5'
18432 3' -63.8 NC_004681.1 + 9105 0.66 0.387515
Target:  5'- gCGCCGCuGGCuCGggcucUGGCgUUGcGGGCUCg -3'
miRNA:   3'- -GCGGCG-CCG-GUa----GCCGgAGC-CUCGAG- -5'
18432 3' -63.8 NC_004681.1 + 9371 0.73 0.137206
Target:  5'- uGCCGCccauguacuGGCCAUUGGCgUCcuucgucaggcgcaGGAGCUCc -3'
miRNA:   3'- gCGGCG---------CCGGUAGCCGgAG--------------CCUCGAG- -5'
18432 3' -63.8 NC_004681.1 + 10670 0.67 0.317486
Target:  5'- uGcCCGCGGCCGUCGcguGCaaggCGGgagacaAGCUCa -3'
miRNA:   3'- gC-GGCGCCGGUAGC---CGga--GCC------UCGAG- -5'
18432 3' -63.8 NC_004681.1 + 11150 0.67 0.31032
Target:  5'- aGuCCGUGGCCAUCacacgaGCCUUGGGuaggcccgacuuGCUCu -3'
miRNA:   3'- gC-GGCGCCGGUAGc-----CGGAGCCU------------CGAG- -5'
18432 3' -63.8 NC_004681.1 + 13682 0.66 0.387515
Target:  5'- uGgCGUGGCCGcccgCGGCCUUGaAGCg- -3'
miRNA:   3'- gCgGCGCCGGUa---GCCGGAGCcUCGag -5'
18432 3' -63.8 NC_004681.1 + 14552 0.68 0.269912
Target:  5'- gCGCgCGCGGCguUCGccuccGCCUCGcGGGCg- -3'
miRNA:   3'- -GCG-GCGCCGguAGC-----CGGAGC-CUCGag -5'
18432 3' -63.8 NC_004681.1 + 15670 0.68 0.282891
Target:  5'- aCGCCaaCGGCgaCGUCGagcacGCCUCGGAGgUCa -3'
miRNA:   3'- -GCGGc-GCCG--GUAGC-----CGGAGCCUCgAG- -5'
18432 3' -63.8 NC_004681.1 + 17483 0.69 0.245399
Target:  5'- uGCC-UGGCaugggCGGCCUCGGAGaCUUc -3'
miRNA:   3'- gCGGcGCCGgua--GCCGGAGCCUC-GAG- -5'
18432 3' -63.8 NC_004681.1 + 17582 0.76 0.077678
Target:  5'- aCGCCGCGGCCAagcgccgugguaUCGGCggCUCGGGcGCg- -3'
miRNA:   3'- -GCGGCGCCGGU------------AGCCG--GAGCCU-CGag -5'
18432 3' -63.8 NC_004681.1 + 17914 0.69 0.22825
Target:  5'- uGCCuugcGCGGCCgccgcguugauGUCGGCCUgCGuGGGCUg -3'
miRNA:   3'- gCGG----CGCCGG-----------UAGCCGGA-GC-CUCGAg -5'
18432 3' -63.8 NC_004681.1 + 18377 0.67 0.324776
Target:  5'- gGaCUGCGGCCGUgcCGcGCC-CGGAGUUg -3'
miRNA:   3'- gC-GGCGCCGGUA--GC-CGGaGCCUCGAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.