miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18432 3' -63.8 NC_004681.1 + 19901 0.66 0.387515
Target:  5'- aGCaCGCGGUacuggCGGCCguucuuagCGGAGC-Cg -3'
miRNA:   3'- gCG-GCGCCGgua--GCCGGa-------GCCUCGaG- -5'
18432 3' -63.8 NC_004681.1 + 24298 0.68 0.263604
Target:  5'- gGCCGCGGUUgAUCGGCUugUUGGuGCg- -3'
miRNA:   3'- gCGGCGCCGG-UAGCCGG--AGCCuCGag -5'
18432 3' -63.8 NC_004681.1 + 27763 0.67 0.31032
Target:  5'- cCGCCGCcGCCGuaUCGGUaacCGGAGUUg -3'
miRNA:   3'- -GCGGCGcCGGU--AGCCGga-GCCUCGAg -5'
18432 3' -63.8 NC_004681.1 + 28227 0.67 0.31032
Target:  5'- cCGCCGCcGCCGUUGcCCgCGGGGCcgUCg -3'
miRNA:   3'- -GCGGCGcCGGUAGCcGGaGCCUCG--AG- -5'
18432 3' -63.8 NC_004681.1 + 30044 1.08 0.000299
Target:  5'- cCGCCGCGGCCAUCGGCCUCGGAGCUCc -3'
miRNA:   3'- -GCGGCGCCGGUAGCCGGAGCCUCGAG- -5'
18432 3' -63.8 NC_004681.1 + 30872 0.72 0.153178
Target:  5'- uGgCGCGGCCGUUGGugaccaggcCCUUGGAGCcCg -3'
miRNA:   3'- gCgGCGCCGGUAGCC---------GGAGCCUCGaG- -5'
18432 3' -63.8 NC_004681.1 + 32017 0.66 0.363076
Target:  5'- gCGCCGCGGgUGUCGGCaCggcCGGuGUg- -3'
miRNA:   3'- -GCGGCGCCgGUAGCCG-Ga--GCCuCGag -5'
18432 3' -63.8 NC_004681.1 + 33750 0.67 0.347388
Target:  5'- gGaaGCGGCCGagcgCGGCUg-GGAGCUUc -3'
miRNA:   3'- gCggCGCCGGUa---GCCGGagCCUCGAG- -5'
18432 3' -63.8 NC_004681.1 + 37043 0.68 0.28223
Target:  5'- cCGCCGCGuggagucGCCuacUGGaugaCUCGGAGUUCg -3'
miRNA:   3'- -GCGGCGC-------CGGua-GCCg---GAGCCUCGAG- -5'
18432 3' -63.8 NC_004681.1 + 38041 0.85 0.016064
Target:  5'- gGCCGagGGCCAUcCGGCCUCGGGGCUg -3'
miRNA:   3'- gCGGCg-CCGGUA-GCCGGAGCCUCGAg -5'
18432 3' -63.8 NC_004681.1 + 39786 0.68 0.269912
Target:  5'- cCGCCGCGcGaCCAUCGccucccacGCCUCguGGGGCa- -3'
miRNA:   3'- -GCGGCGC-C-GGUAGC--------CGGAG--CCUCGag -5'
18432 3' -63.8 NC_004681.1 + 40574 0.69 0.239567
Target:  5'- uCGUgGCGG-CGUCGGCCgCGGcGUUCa -3'
miRNA:   3'- -GCGgCGCCgGUAGCCGGaGCCuCGAG- -5'
18432 3' -63.8 NC_004681.1 + 44228 0.73 0.138269
Target:  5'- gGCCa-GGCCcgCGGCCUCGGGGgUg -3'
miRNA:   3'- gCGGcgCCGGuaGCCGGAGCCUCgAg -5'
18432 3' -63.8 NC_004681.1 + 44986 0.66 0.371102
Target:  5'- uGCUGCauCC-UCGGCCUCGuGGGCgUCg -3'
miRNA:   3'- gCGGCGccGGuAGCCGGAGC-CUCG-AG- -5'
18432 3' -63.8 NC_004681.1 + 45074 0.69 0.251349
Target:  5'- cCGCCGCGGUCga-GGCCcucgccgCGGucucGCUCa -3'
miRNA:   3'- -GCGGCGCCGGuagCCGGa------GCCu---CGAG- -5'
18432 3' -63.8 NC_004681.1 + 46448 0.68 0.262357
Target:  5'- -cCCGCGGCCugcuccgguaccUCGGCCU-GGAGgUCu -3'
miRNA:   3'- gcGGCGCCGGu-----------AGCCGGAgCCUCgAG- -5'
18432 3' -63.8 NC_004681.1 + 46795 0.68 0.289563
Target:  5'- -cCCGCGcGCCGUCgaGGaauaCUCGGAGCg- -3'
miRNA:   3'- gcGGCGC-CGGUAG--CCg---GAGCCUCGag -5'
18432 3' -63.8 NC_004681.1 + 46934 0.67 0.324776
Target:  5'- uGCCGgGGCgGUU-GCCgCGGGGCUg -3'
miRNA:   3'- gCGGCgCCGgUAGcCGGaGCCUCGAg -5'
18432 3' -63.8 NC_004681.1 + 47222 0.71 0.165303
Target:  5'- uCGgCGCGGCCcUCGGCguuCUCGucGCUCa -3'
miRNA:   3'- -GCgGCGCCGGuAGCCG---GAGCcuCGAG- -5'
18432 3' -63.8 NC_004681.1 + 50011 0.67 0.347388
Target:  5'- -cCCGCGcGCCGUCuGGCCgcgcuacaaGGAGCg- -3'
miRNA:   3'- gcGGCGC-CGGUAG-CCGGag-------CCUCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.