Results 41 - 51 of 51 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18432 | 3' | -63.8 | NC_004681.1 | + | 51319 | 0.67 | 0.31032 |
Target: 5'- cCGCCGaCGucaucaCCGUC-GCCgCGGAGCUCg -3' miRNA: 3'- -GCGGC-GCc-----GGUAGcCGGaGCCUCGAG- -5' |
|||||||
18432 | 3' | -63.8 | NC_004681.1 | + | 52951 | 0.68 | 0.296359 |
Target: 5'- gGCCGaUGGCCAgccuUCcGCC-CGGaAGCUCa -3' miRNA: 3'- gCGGC-GCCGGU----AGcCGGaGCC-UCGAG- -5' |
|||||||
18432 | 3' | -63.8 | NC_004681.1 | + | 53265 | 0.66 | 0.371102 |
Target: 5'- uGUCGCGGCCAUgaggaaguccgUGGCCg-GGuGaCUCa -3' miRNA: 3'- gCGGCGCCGGUA-----------GCCGGagCCuC-GAG- -5' |
|||||||
18432 | 3' | -63.8 | NC_004681.1 | + | 60556 | 0.68 | 0.27634 |
Target: 5'- aCGCCGCacgccucgGGCCGcUGGCCgacgaacgUGGuGCUCg -3' miRNA: 3'- -GCGGCG--------CCGGUaGCCGGa-------GCCuCGAG- -5' |
|||||||
18432 | 3' | -63.8 | NC_004681.1 | + | 60693 | 0.68 | 0.263604 |
Target: 5'- uGCCGCaGCgG-CGGCCUCGucGAGCa- -3' miRNA: 3'- gCGGCGcCGgUaGCCGGAGC--CUCGag -5' |
|||||||
18432 | 3' | -63.8 | NC_004681.1 | + | 61762 | 0.81 | 0.034585 |
Target: 5'- aGaCCGCGGCCGccaUCGGCCa-GGAGCUCu -3' miRNA: 3'- gC-GGCGCCGGU---AGCCGGagCCUCGAG- -5' |
|||||||
18432 | 3' | -63.8 | NC_004681.1 | + | 62950 | 0.66 | 0.387515 |
Target: 5'- gGUCGCGGUCcuucUCGGCgcgCUCGGuGCg- -3' miRNA: 3'- gCGGCGCCGGu---AGCCG---GAGCCuCGag -5' |
|||||||
18432 | 3' | -63.8 | NC_004681.1 | + | 70011 | 0.76 | 0.079772 |
Target: 5'- uGcCCGCuGGCUuUCGcGUCUCGGAGCUCa -3' miRNA: 3'- gC-GGCG-CCGGuAGC-CGGAGCCUCGAG- -5' |
|||||||
18432 | 3' | -63.8 | NC_004681.1 | + | 71664 | 0.68 | 0.282891 |
Target: 5'- aCGuuGCGGCCGUCcGCg-CGGAaCUCa -3' miRNA: 3'- -GCggCGCCGGUAGcCGgaGCCUcGAG- -5' |
|||||||
18432 | 3' | -63.8 | NC_004681.1 | + | 74981 | 0.67 | 0.31032 |
Target: 5'- aGCCaGCGGCCGUcaCGGUCUCGauAGcCUCc -3' miRNA: 3'- gCGG-CGCCGGUA--GCCGGAGCc-UC-GAG- -5' |
|||||||
18432 | 3' | -63.8 | NC_004681.1 | + | 75518 | 0.7 | 0.222763 |
Target: 5'- gCGCCGCgaguacGGCCGcgcggaauUCGGUCUCGu-GCUCg -3' miRNA: 3'- -GCGGCG------CCGGU--------AGCCGGAGCcuCGAG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home