miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18432 3' -63.8 NC_004681.1 + 75518 0.7 0.222763
Target:  5'- gCGCCGCgaguacGGCCGcgcggaauUCGGUCUCGu-GCUCg -3'
miRNA:   3'- -GCGGCG------CCGGU--------AGCCGGAGCcuCGAG- -5'
18432 3' -63.8 NC_004681.1 + 74981 0.67 0.31032
Target:  5'- aGCCaGCGGCCGUcaCGGUCUCGauAGcCUCc -3'
miRNA:   3'- gCGG-CGCCGGUA--GCCGGAGCc-UC-GAG- -5'
18432 3' -63.8 NC_004681.1 + 71664 0.68 0.282891
Target:  5'- aCGuuGCGGCCGUCcGCg-CGGAaCUCa -3'
miRNA:   3'- -GCggCGCCGGUAGcCGgaGCCUcGAG- -5'
18432 3' -63.8 NC_004681.1 + 70011 0.76 0.079772
Target:  5'- uGcCCGCuGGCUuUCGcGUCUCGGAGCUCa -3'
miRNA:   3'- gC-GGCG-CCGGuAGC-CGGAGCCUCGAG- -5'
18432 3' -63.8 NC_004681.1 + 62950 0.66 0.387515
Target:  5'- gGUCGCGGUCcuucUCGGCgcgCUCGGuGCg- -3'
miRNA:   3'- gCGGCGCCGGu---AGCCG---GAGCCuCGag -5'
18432 3' -63.8 NC_004681.1 + 61762 0.81 0.034585
Target:  5'- aGaCCGCGGCCGccaUCGGCCa-GGAGCUCu -3'
miRNA:   3'- gC-GGCGCCGGU---AGCCGGagCCUCGAG- -5'
18432 3' -63.8 NC_004681.1 + 60693 0.68 0.263604
Target:  5'- uGCCGCaGCgG-CGGCCUCGucGAGCa- -3'
miRNA:   3'- gCGGCGcCGgUaGCCGGAGC--CUCGag -5'
18432 3' -63.8 NC_004681.1 + 60556 0.68 0.27634
Target:  5'- aCGCCGCacgccucgGGCCGcUGGCCgacgaacgUGGuGCUCg -3'
miRNA:   3'- -GCGGCG--------CCGGUaGCCGGa-------GCCuCGAG- -5'
18432 3' -63.8 NC_004681.1 + 53265 0.66 0.371102
Target:  5'- uGUCGCGGCCAUgaggaaguccgUGGCCg-GGuGaCUCa -3'
miRNA:   3'- gCGGCGCCGGUA-----------GCCGGagCCuC-GAG- -5'
18432 3' -63.8 NC_004681.1 + 52951 0.68 0.296359
Target:  5'- gGCCGaUGGCCAgccuUCcGCC-CGGaAGCUCa -3'
miRNA:   3'- gCGGC-GCCGGU----AGcCGGaGCC-UCGAG- -5'
18432 3' -63.8 NC_004681.1 + 51319 0.67 0.31032
Target:  5'- cCGCCGaCGucaucaCCGUC-GCCgCGGAGCUCg -3'
miRNA:   3'- -GCGGC-GCc-----GGUAGcCGGaGCCUCGAG- -5'
18432 3' -63.8 NC_004681.1 + 50011 0.67 0.347388
Target:  5'- -cCCGCGcGCCGUCuGGCCgcgcuacaaGGAGCg- -3'
miRNA:   3'- gcGGCGC-CGGUAG-CCGGag-------CCUCGag -5'
18432 3' -63.8 NC_004681.1 + 47222 0.71 0.165303
Target:  5'- uCGgCGCGGCCcUCGGCguuCUCGucGCUCa -3'
miRNA:   3'- -GCgGCGCCGGuAGCCG---GAGCcuCGAG- -5'
18432 3' -63.8 NC_004681.1 + 46934 0.67 0.324776
Target:  5'- uGCCGgGGCgGUU-GCCgCGGGGCUg -3'
miRNA:   3'- gCGGCgCCGgUAGcCGGaGCCUCGAg -5'
18432 3' -63.8 NC_004681.1 + 46795 0.68 0.289563
Target:  5'- -cCCGCGcGCCGUCgaGGaauaCUCGGAGCg- -3'
miRNA:   3'- gcGGCGC-CGGUAG--CCg---GAGCCUCGag -5'
18432 3' -63.8 NC_004681.1 + 46448 0.68 0.262357
Target:  5'- -cCCGCGGCCugcuccgguaccUCGGCCU-GGAGgUCu -3'
miRNA:   3'- gcGGCGCCGGu-----------AGCCGGAgCCUCgAG- -5'
18432 3' -63.8 NC_004681.1 + 45074 0.69 0.251349
Target:  5'- cCGCCGCGGUCga-GGCCcucgccgCGGucucGCUCa -3'
miRNA:   3'- -GCGGCGCCGGuagCCGGa------GCCu---CGAG- -5'
18432 3' -63.8 NC_004681.1 + 44986 0.66 0.371102
Target:  5'- uGCUGCauCC-UCGGCCUCGuGGGCgUCg -3'
miRNA:   3'- gCGGCGccGGuAGCCGGAGC-CUCG-AG- -5'
18432 3' -63.8 NC_004681.1 + 44228 0.73 0.138269
Target:  5'- gGCCa-GGCCcgCGGCCUCGGGGgUg -3'
miRNA:   3'- gCGGcgCCGGuaGCCGGAGCCUCgAg -5'
18432 3' -63.8 NC_004681.1 + 40574 0.69 0.239567
Target:  5'- uCGUgGCGG-CGUCGGCCgCGGcGUUCa -3'
miRNA:   3'- -GCGgCGCCgGUAGCCGGaGCCuCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.