Results 21 - 40 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18432 | 3' | -63.8 | NC_004681.1 | + | 39786 | 0.68 | 0.269912 |
Target: 5'- cCGCCGCGcGaCCAUCGccucccacGCCUCguGGGGCa- -3' miRNA: 3'- -GCGGCGC-C-GGUAGC--------CGGAG--CCUCGag -5' |
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18432 | 3' | -63.8 | NC_004681.1 | + | 38041 | 0.85 | 0.016064 |
Target: 5'- gGCCGagGGCCAUcCGGCCUCGGGGCUg -3' miRNA: 3'- gCGGCg-CCGGUA-GCCGGAGCCUCGAg -5' |
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18432 | 3' | -63.8 | NC_004681.1 | + | 37043 | 0.68 | 0.28223 |
Target: 5'- cCGCCGCGuggagucGCCuacUGGaugaCUCGGAGUUCg -3' miRNA: 3'- -GCGGCGC-------CGGua-GCCg---GAGCCUCGAG- -5' |
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18432 | 3' | -63.8 | NC_004681.1 | + | 33750 | 0.67 | 0.347388 |
Target: 5'- gGaaGCGGCCGagcgCGGCUg-GGAGCUUc -3' miRNA: 3'- gCggCGCCGGUa---GCCGGagCCUCGAG- -5' |
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18432 | 3' | -63.8 | NC_004681.1 | + | 32017 | 0.66 | 0.363076 |
Target: 5'- gCGCCGCGGgUGUCGGCaCggcCGGuGUg- -3' miRNA: 3'- -GCGGCGCCgGUAGCCG-Ga--GCCuCGag -5' |
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18432 | 3' | -63.8 | NC_004681.1 | + | 30872 | 0.72 | 0.153178 |
Target: 5'- uGgCGCGGCCGUUGGugaccaggcCCUUGGAGCcCg -3' miRNA: 3'- gCgGCGCCGGUAGCC---------GGAGCCUCGaG- -5' |
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18432 | 3' | -63.8 | NC_004681.1 | + | 30044 | 1.08 | 0.000299 |
Target: 5'- cCGCCGCGGCCAUCGGCCUCGGAGCUCc -3' miRNA: 3'- -GCGGCGCCGGUAGCCGGAGCCUCGAG- -5' |
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18432 | 3' | -63.8 | NC_004681.1 | + | 28227 | 0.67 | 0.31032 |
Target: 5'- cCGCCGCcGCCGUUGcCCgCGGGGCcgUCg -3' miRNA: 3'- -GCGGCGcCGGUAGCcGGaGCCUCG--AG- -5' |
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18432 | 3' | -63.8 | NC_004681.1 | + | 27763 | 0.67 | 0.31032 |
Target: 5'- cCGCCGCcGCCGuaUCGGUaacCGGAGUUg -3' miRNA: 3'- -GCGGCGcCGGU--AGCCGga-GCCUCGAg -5' |
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18432 | 3' | -63.8 | NC_004681.1 | + | 24298 | 0.68 | 0.263604 |
Target: 5'- gGCCGCGGUUgAUCGGCUugUUGGuGCg- -3' miRNA: 3'- gCGGCGCCGG-UAGCCGG--AGCCuCGag -5' |
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18432 | 3' | -63.8 | NC_004681.1 | + | 19901 | 0.66 | 0.387515 |
Target: 5'- aGCaCGCGGUacuggCGGCCguucuuagCGGAGC-Cg -3' miRNA: 3'- gCG-GCGCCGgua--GCCGGa-------GCCUCGaG- -5' |
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18432 | 3' | -63.8 | NC_004681.1 | + | 18377 | 0.67 | 0.324776 |
Target: 5'- gGaCUGCGGCCGUgcCGcGCC-CGGAGUUg -3' miRNA: 3'- gC-GGCGCCGGUA--GC-CGGaGCCUCGAg -5' |
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18432 | 3' | -63.8 | NC_004681.1 | + | 17914 | 0.69 | 0.22825 |
Target: 5'- uGCCuugcGCGGCCgccgcguugauGUCGGCCUgCGuGGGCUg -3' miRNA: 3'- gCGG----CGCCGG-----------UAGCCGGA-GC-CUCGAg -5' |
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18432 | 3' | -63.8 | NC_004681.1 | + | 17582 | 0.76 | 0.077678 |
Target: 5'- aCGCCGCGGCCAagcgccgugguaUCGGCggCUCGGGcGCg- -3' miRNA: 3'- -GCGGCGCCGGU------------AGCCG--GAGCCU-CGag -5' |
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18432 | 3' | -63.8 | NC_004681.1 | + | 17483 | 0.69 | 0.245399 |
Target: 5'- uGCC-UGGCaugggCGGCCUCGGAGaCUUc -3' miRNA: 3'- gCGGcGCCGgua--GCCGGAGCCUC-GAG- -5' |
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18432 | 3' | -63.8 | NC_004681.1 | + | 15670 | 0.68 | 0.282891 |
Target: 5'- aCGCCaaCGGCgaCGUCGagcacGCCUCGGAGgUCa -3' miRNA: 3'- -GCGGc-GCCG--GUAGC-----CGGAGCCUCgAG- -5' |
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18432 | 3' | -63.8 | NC_004681.1 | + | 14552 | 0.68 | 0.269912 |
Target: 5'- gCGCgCGCGGCguUCGccuccGCCUCGcGGGCg- -3' miRNA: 3'- -GCG-GCGCCGguAGC-----CGGAGC-CUCGag -5' |
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18432 | 3' | -63.8 | NC_004681.1 | + | 13682 | 0.66 | 0.387515 |
Target: 5'- uGgCGUGGCCGcccgCGGCCUUGaAGCg- -3' miRNA: 3'- gCgGCGCCGGUa---GCCGGAGCcUCGag -5' |
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18432 | 3' | -63.8 | NC_004681.1 | + | 11150 | 0.67 | 0.31032 |
Target: 5'- aGuCCGUGGCCAUCacacgaGCCUUGGGuaggcccgacuuGCUCu -3' miRNA: 3'- gC-GGCGCCGGUAGc-----CGGAGCCU------------CGAG- -5' |
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18432 | 3' | -63.8 | NC_004681.1 | + | 10670 | 0.67 | 0.317486 |
Target: 5'- uGcCCGCGGCCGUCGcguGCaaggCGGgagacaAGCUCa -3' miRNA: 3'- gC-GGCGCCGGUAGC---CGga--GCC------UCGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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