miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18432 3' -63.8 NC_004681.1 + 8378 0.66 0.355171
Target:  5'- uCG-CGCGGUCAUCaugaaCC-CGGAGCUCa -3'
miRNA:   3'- -GCgGCGCCGGUAGcc---GGaGCCUCGAG- -5'
18432 3' -63.8 NC_004681.1 + 15670 0.68 0.282891
Target:  5'- aCGCCaaCGGCgaCGUCGagcacGCCUCGGAGgUCa -3'
miRNA:   3'- -GCGGc-GCCG--GUAGC-----CGGAGCCUCgAG- -5'
18432 3' -63.8 NC_004681.1 + 46795 0.68 0.289563
Target:  5'- -cCCGCGcGCCGUCgaGGaauaCUCGGAGCg- -3'
miRNA:   3'- gcGGCGC-CGGUAG--CCg---GAGCCUCGag -5'
18432 3' -63.8 NC_004681.1 + 2980 0.68 0.296359
Target:  5'- -uUCGCGGCCAUCGaGCagcCGGAuacccGCUCu -3'
miRNA:   3'- gcGGCGCCGGUAGC-CGga-GCCU-----CGAG- -5'
18432 3' -63.8 NC_004681.1 + 51319 0.67 0.31032
Target:  5'- cCGCCGaCGucaucaCCGUC-GCCgCGGAGCUCg -3'
miRNA:   3'- -GCGGC-GCc-----GGUAGcCGGaGCCUCGAG- -5'
18432 3' -63.8 NC_004681.1 + 10670 0.67 0.317486
Target:  5'- uGcCCGCGGCCGUCGcguGCaaggCGGgagacaAGCUCa -3'
miRNA:   3'- gC-GGCGCCGGUAGC---CGga--GCC------UCGAG- -5'
18432 3' -63.8 NC_004681.1 + 33750 0.67 0.347388
Target:  5'- gGaaGCGGCCGagcgCGGCUg-GGAGCUUc -3'
miRNA:   3'- gCggCGCCGGUa---GCCGGagCCUCGAG- -5'
18432 3' -63.8 NC_004681.1 + 50011 0.67 0.347388
Target:  5'- -cCCGCGcGCCGUCuGGCCgcgcuacaaGGAGCg- -3'
miRNA:   3'- gcGGCGC-CGGUAG-CCGGag-------CCUCGag -5'
18432 3' -63.8 NC_004681.1 + 7259 0.66 0.355171
Target:  5'- aCGaCGCGGCCGUCcaCCUCGGcGC-Cg -3'
miRNA:   3'- -GCgGCGCCGGUAGccGGAGCCuCGaG- -5'
18432 3' -63.8 NC_004681.1 + 60556 0.68 0.27634
Target:  5'- aCGCCGCacgccucgGGCCGcUGGCCgacgaacgUGGuGCUCg -3'
miRNA:   3'- -GCGGCG--------CCGGUaGCCGGa-------GCCuCGAG- -5'
18432 3' -63.8 NC_004681.1 + 39786 0.68 0.269912
Target:  5'- cCGCCGCGcGaCCAUCGccucccacGCCUCguGGGGCa- -3'
miRNA:   3'- -GCGGCGC-C-GGUAGC--------CGGAG--CCUCGag -5'
18432 3' -63.8 NC_004681.1 + 46448 0.68 0.262357
Target:  5'- -cCCGCGGCCugcuccgguaccUCGGCCU-GGAGgUCu -3'
miRNA:   3'- gcGGCGCCGGu-----------AGCCGGAgCCUCgAG- -5'
18432 3' -63.8 NC_004681.1 + 38041 0.85 0.016064
Target:  5'- gGCCGagGGCCAUcCGGCCUCGGGGCUg -3'
miRNA:   3'- gCGGCg-CCGGUA-GCCGGAGCCUCGAg -5'
18432 3' -63.8 NC_004681.1 + 61762 0.81 0.034585
Target:  5'- aGaCCGCGGCCGccaUCGGCCa-GGAGCUCu -3'
miRNA:   3'- gC-GGCGCCGGU---AGCCGGagCCUCGAG- -5'
18432 3' -63.8 NC_004681.1 + 17582 0.76 0.077678
Target:  5'- aCGCCGCGGCCAagcgccgugguaUCGGCggCUCGGGcGCg- -3'
miRNA:   3'- -GCGGCGCCGGU------------AGCCG--GAGCCU-CGag -5'
18432 3' -63.8 NC_004681.1 + 70011 0.76 0.079772
Target:  5'- uGcCCGCuGGCUuUCGcGUCUCGGAGCUCa -3'
miRNA:   3'- gC-GGCG-CCGGuAGC-CGGAGCCUCGAG- -5'
18432 3' -63.8 NC_004681.1 + 2018 0.72 0.153178
Target:  5'- gGCCGCGGCCAggUGGUCgUGGAGggCg -3'
miRNA:   3'- gCGGCGCCGGUa-GCCGGaGCCUCgaG- -5'
18432 3' -63.8 NC_004681.1 + 8532 0.71 0.18743
Target:  5'- -cCCGCGGCCAUCGGCCagaaccccuUCGG--UUCg -3'
miRNA:   3'- gcGGCGCCGGUAGCCGG---------AGCCucGAG- -5'
18432 3' -63.8 NC_004681.1 + 17483 0.69 0.245399
Target:  5'- uGCC-UGGCaugggCGGCCUCGGAGaCUUc -3'
miRNA:   3'- gCGGcGCCGgua--GCCGGAGCCUC-GAG- -5'
18432 3' -63.8 NC_004681.1 + 45074 0.69 0.251349
Target:  5'- cCGCCGCGGUCga-GGCCcucgccgCGGucucGCUCa -3'
miRNA:   3'- -GCGGCGCCGGuagCCGGa------GCCu---CGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.