miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18432 3' -63.8 NC_004681.1 + 9371 0.73 0.137206
Target:  5'- uGCCGCccauguacuGGCCAUUGGCgUCcuucgucaggcgcaGGAGCUCc -3'
miRNA:   3'- gCGGCG---------CCGGUAGCCGgAG--------------CCUCGAG- -5'
18432 3' -63.8 NC_004681.1 + 74981 0.67 0.31032
Target:  5'- aGCCaGCGGCCGUcaCGGUCUCGauAGcCUCc -3'
miRNA:   3'- gCGG-CGCCGGUA--GCCGGAGCc-UC-GAG- -5'
18432 3' -63.8 NC_004681.1 + 27763 0.67 0.31032
Target:  5'- cCGCCGCcGCCGuaUCGGUaacCGGAGUUg -3'
miRNA:   3'- -GCGGCGcCGGU--AGCCGga-GCCUCGAg -5'
18432 3' -63.8 NC_004681.1 + 19901 0.66 0.387515
Target:  5'- aGCaCGCGGUacuggCGGCCguucuuagCGGAGC-Cg -3'
miRNA:   3'- gCG-GCGCCGgua--GCCGGa-------GCCUCGaG- -5'
18432 3' -63.8 NC_004681.1 + 6611 0.7 0.206972
Target:  5'- gCGCCGCGGC--UCGGUCUuccccgaguccgUGGAGCg- -3'
miRNA:   3'- -GCGGCGCCGguAGCCGGA------------GCCUCGag -5'
18432 3' -63.8 NC_004681.1 + 8559 0.7 0.222763
Target:  5'- uGCCGgGGUCAgccGCCUUGGcGCUCa -3'
miRNA:   3'- gCGGCgCCGGUagcCGGAGCCuCGAG- -5'
18432 3' -63.8 NC_004681.1 + 17914 0.69 0.22825
Target:  5'- uGCCuugcGCGGCCgccgcguugauGUCGGCCUgCGuGGGCUg -3'
miRNA:   3'- gCGG----CGCCGG-----------UAGCCGGA-GC-CUCGAg -5'
18432 3' -63.8 NC_004681.1 + 40574 0.69 0.239567
Target:  5'- uCGUgGCGG-CGUCGGCCgCGGcGUUCa -3'
miRNA:   3'- -GCGgCGCCgGUAGCCGGaGCCuCGAG- -5'
18432 3' -63.8 NC_004681.1 + 14552 0.68 0.269912
Target:  5'- gCGCgCGCGGCguUCGccuccGCCUCGcGGGCg- -3'
miRNA:   3'- -GCG-GCGCCGguAGC-----CGGAGC-CUCGag -5'
18432 3' -63.8 NC_004681.1 + 11150 0.67 0.31032
Target:  5'- aGuCCGUGGCCAUCacacgaGCCUUGGGuaggcccgacuuGCUCu -3'
miRNA:   3'- gC-GGCGCCGGUAGc-----CGGAGCCU------------CGAG- -5'
18432 3' -63.8 NC_004681.1 + 71664 0.68 0.282891
Target:  5'- aCGuuGCGGCCGUCcGCg-CGGAaCUCa -3'
miRNA:   3'- -GCggCGCCGGUAGcCGgaGCCUcGAG- -5'
18432 3' -63.8 NC_004681.1 + 60693 0.68 0.263604
Target:  5'- uGCCGCaGCgG-CGGCCUCGucGAGCa- -3'
miRNA:   3'- gCGGCGcCGgUaGCCGGAGC--CUCGag -5'
18432 3' -63.8 NC_004681.1 + 44228 0.73 0.138269
Target:  5'- gGCCa-GGCCcgCGGCCUCGGGGgUg -3'
miRNA:   3'- gCGGcgCCGGuaGCCGGAGCCUCgAg -5'
18432 3' -63.8 NC_004681.1 + 5966 0.68 0.285545
Target:  5'- uGCgCGCGGUCGaacuguUCGcgcaggcgcugcugaGCCUCGGGGCUg -3'
miRNA:   3'- gCG-GCGCCGGU------AGC---------------CGGAGCCUCGAg -5'
18432 3' -63.8 NC_004681.1 + 30872 0.72 0.153178
Target:  5'- uGgCGCGGCCGUUGGugaccaggcCCUUGGAGCcCg -3'
miRNA:   3'- gCgGCGCCGGUAGCC---------GGAGCCUCGaG- -5'
18432 3' -63.8 NC_004681.1 + 24298 0.68 0.263604
Target:  5'- gGCCGCGGUUgAUCGGCUugUUGGuGCg- -3'
miRNA:   3'- gCGGCGCCGG-UAGCCGG--AGCCuCGag -5'
18432 3' -63.8 NC_004681.1 + 52951 0.68 0.296359
Target:  5'- gGCCGaUGGCCAgccuUCcGCC-CGGaAGCUCa -3'
miRNA:   3'- gCGGC-GCCGGU----AGcCGGaGCC-UCGAG- -5'
18432 3' -63.8 NC_004681.1 + 28227 0.67 0.31032
Target:  5'- cCGCCGCcGCCGUUGcCCgCGGGGCcgUCg -3'
miRNA:   3'- -GCGGCGcCGGUAGCcGGaGCCUCG--AG- -5'
18432 3' -63.8 NC_004681.1 + 47222 0.71 0.165303
Target:  5'- uCGgCGCGGCCcUCGGCguuCUCGucGCUCa -3'
miRNA:   3'- -GCgGCGCCGGuAGCCG---GAGCcuCGAG- -5'
18432 3' -63.8 NC_004681.1 + 75518 0.7 0.222763
Target:  5'- gCGCCGCgaguacGGCCGcgcggaauUCGGUCUCGu-GCUCg -3'
miRNA:   3'- -GCGGCG------CCGGU--------AGCCGGAGCcuCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.