miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18433 3' -64.6 NC_004681.1 + 1361 0.66 0.36297
Target:  5'- --aUGUUCGCCGuguuCuGCgaGGCGGUGGCCa -3'
miRNA:   3'- cuaGCGGGCGGU----GuCG--CCGCCGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 5194 0.66 0.36297
Target:  5'- --gCGCCCGCCAUGGCcGaGCuGUcGCCa -3'
miRNA:   3'- cuaGCGGGCGGUGUCG-C-CGcCGcCGG- -5'
18433 3' -64.6 NC_004681.1 + 60196 0.66 0.36218
Target:  5'- uGAUCGgcaCCCGCCGC-GCGGggaucacgccuagUGGCGGaCUu -3'
miRNA:   3'- -CUAGC---GGGCGGUGuCGCC-------------GCCGCC-GG- -5'
18433 3' -64.6 NC_004681.1 + 50866 0.66 0.358245
Target:  5'- -cUCGCUugugaGCCAgGGUGGCGGCucggacuugcucgauGGUCa -3'
miRNA:   3'- cuAGCGGg----CGGUgUCGCCGCCG---------------CCGG- -5'
18433 3' -64.6 NC_004681.1 + 60313 0.66 0.355119
Target:  5'- ---aGUCCGCCACuaGGCGugauccccgcGCGGCGgguGCCg -3'
miRNA:   3'- cuagCGGGCGGUG--UCGC----------CGCCGC---CGG- -5'
18433 3' -64.6 NC_004681.1 + 47046 0.66 0.355119
Target:  5'- cAUCGCCuUGUCGCc-CGaGuCGGCGGCCu -3'
miRNA:   3'- cUAGCGG-GCGGUGucGC-C-GCCGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 27342 0.66 0.355119
Target:  5'- uGUCGCCCGUgAgauUGGUGGUGuucaCGGCCa -3'
miRNA:   3'- cUAGCGGGCGgU---GUCGCCGCc---GCCGG- -5'
18433 3' -64.6 NC_004681.1 + 32632 0.66 0.355119
Target:  5'- --aCGUUCGCCACacucucuucacGGUGGCGGggaccugGGCCg -3'
miRNA:   3'- cuaGCGGGCGGUG-----------UCGCCGCCg------CCGG- -5'
18433 3' -64.6 NC_004681.1 + 22907 0.66 0.346622
Target:  5'- gGGUCGCCCcggcgauGCCGUAGUaGCGGCccacgacaGGCCc -3'
miRNA:   3'- -CUAGCGGG-------CGGUGUCGcCGCCG--------CCGG- -5'
18433 3' -64.6 NC_004681.1 + 61397 0.66 0.339779
Target:  5'- aGGUCGgCgGCaACAGCaacGGgGGCGGCa -3'
miRNA:   3'- -CUAGCgGgCGgUGUCG---CCgCCGCCGg -5'
18433 3' -64.6 NC_004681.1 + 43918 0.66 0.339779
Target:  5'- --aCGCUggUGCCGUAGCGGgGGUGGgCg -3'
miRNA:   3'- cuaGCGG--GCGGUGUCGCCgCCGCCgG- -5'
18433 3' -64.6 NC_004681.1 + 13129 0.66 0.339779
Target:  5'- --cUGCCCGCCACcgcccuucGUGGCacGGCGGgUa -3'
miRNA:   3'- cuaGCGGGCGGUGu-------CGCCG--CCGCCgG- -5'
18433 3' -64.6 NC_004681.1 + 61200 0.66 0.335271
Target:  5'- ---gGCCUGCCcaccuugggugaaccGCAGCucggGGuCGGCGGUCa -3'
miRNA:   3'- cuagCGGGCGG---------------UGUCG----CC-GCCGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 17888 0.66 0.332291
Target:  5'- aGAagGaaUuCCugGGCGGCGGCGGCg -3'
miRNA:   3'- -CUagCggGcGGugUCGCCGCCGCCGg -5'
18433 3' -64.6 NC_004681.1 + 48765 0.67 0.327856
Target:  5'- -cUgGCCCGCCAgGGUucccgccagcguggaGGCGGUGucauuGCCg -3'
miRNA:   3'- cuAgCGGGCGGUgUCG---------------CCGCCGC-----CGG- -5'
18433 3' -64.6 NC_004681.1 + 30027 0.67 0.324924
Target:  5'- cGUCGCaaccgucaUCGCCGCcGCGGCcauCGGCCu -3'
miRNA:   3'- cUAGCG--------GGCGGUGuCGCCGcc-GCCGG- -5'
18433 3' -64.6 NC_004681.1 + 32101 0.67 0.324924
Target:  5'- aGGUCGUcaCCGgCAUccaggaAGCGGUcaccgcGGCGGCCc -3'
miRNA:   3'- -CUAGCG--GGCgGUG------UCGCCG------CCGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 2016 0.67 0.324195
Target:  5'- --cCGgCCGCgGCcaGGUGGUcguggagGGCGGCCg -3'
miRNA:   3'- cuaGCgGGCGgUG--UCGCCG-------CCGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 53217 0.67 0.322738
Target:  5'- cAUCGCCU-CCGCuagcucaggugucgAGUGGCaccugcaccaGGCGGCCa -3'
miRNA:   3'- cUAGCGGGcGGUG--------------UCGCCG----------CCGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 44680 0.67 0.317681
Target:  5'- --gCGgCgGCCGCgAGC-GCGGCGGCg -3'
miRNA:   3'- cuaGCgGgCGGUG-UCGcCGCCGCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.